Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq95 141 1e-28 seq6 134 2e-26 >seq95 Length=57217 Score = 141 bits (156), Expect = 1e-28 Identities = 760/1205 (63%), Gaps = 82/1205 (7%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||| || || ||||| ||||| ||||||| | | | ||| | || || ||| Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 || || |||||||| |||| || || || | | | ||| || ||| ||| Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||||||| ||| | || |||||| || |||||| || | || || | Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGA 63176 || | | || | |||| |||| ||| | || |||| | || ||||| | Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037 Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 ||| | || || || || ||||| | || | | | | | |||||| ||| | ||| Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 ||||| | | ||| || || || | || || ||||| || ||||| || ||||| Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919 Query 63297 AGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 63354 || || || ||| ||||| | | || ||||| || || ||||| ||||| | Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | | ||| | | | ||||| ||||| || || | || ||||| | | ||||| | Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474 | ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| |||| Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741 Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534 | |||||||| || ||| |||||||||| || ||| || | ||||| ||||| Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681 Query 63535 TAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| ||| ||||| || || || || | || ||||| || || || | || Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || ||||| || || ||| |||||| ||||| | ||||| || ||||| ||| Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562 Query 63654 TGACGAGTAGTTCCCGCATTAAATA----------------------------------- 63678 | || | ||| || ||||| || | Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502 Query 63679 -----AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 || || || ||||| || || || | ||||||| | || |||| Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442 Query 63724 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63782 | ||||| || || ||| || | || | || || || || ||||| ||||| | | Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||||||||| | |||||||| ||| || || | | | ||| ||| | || | | Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || || |||||||| |||||||| | |||||||| || |||||||| | || | || Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263 Query 63903 TTATCCTTATATTTGTTAACTATATCCATGGTAATACT--TGA--AATAATCGGAGAATG 63958 |||| || |||| | | | || | |||| || | | ||| || ||||| || Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207 Query 63959 TTTCCCATTTTTAGGATTAA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 64016 || || |||| || |||| ||| ||| | ||| | || || | || | Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACC 50149 Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || |||||||| || || || ||||| |||| || || ||||| |||||||| Sbjct 50148 TTCTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCG 50089 Query 64077 GGATG 64081 || || Sbjct 50088 GGGTG 50084 >seq6 Length=242052 Score = 134 bits (148), Expect = 2e-26 Identities = 183/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || ||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC-TGTCATG 33757 ||| ||||| || ||||| || || || |||| ||| || ||| | ||| ||||| Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605 Query 33818 AAAGAGATAGTTT 33830 || || ||||| Sbjct 183604 GAAAAGGAAGTTT 183592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811467151120