Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq95 123 3e-23 seq6 122 1e-22 >seq95 Length=57217 Score = 123 bits (136), Expect = 3e-23 Identities = 756/1205 (63%), Gaps = 82/1205 (7%) Strand=Plus/Minus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| ||| || || ||||| ||||| ||||||| | | | ||| | || || ||| Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 || || |||||||| |||| ||||| || | | | ||| || ||| ||| Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 |||||||||||| ||| | || |||||| || |||||| || | || || | Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093 Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT----TCGTA--TAGT 65969 || | | || | |||| |||| ||| | || | || | || ||||| | Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037 Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||| | || || || || ||||| | || | | | | |||||||| ||| | ||| Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979 Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 ||||| | | ||| || || || | || || ||||| || ||||| || ||||| Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919 Query 66090 AGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 66147 || || || ||| | ||| | | || ||||| || || ||||| ||||| | Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861 Query 66148 CGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 | | ||| | | | |||| ||||| || || | || ||||| | | ||||| | Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801 Query 66208 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 66267 | ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| |||| Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741 Query 66268 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTAC 66327 | ||||| || || ||| ||||| |||| || ||| || | ||||| ||||| Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681 Query 66328 TAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 ||| ||| ||||| || || || || | || ||||| || || || | ||| Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 || ||||| || || || ||||||| ||||| | ||||| || ||||| ||| Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562 Query 66447 TGACGACTAGTTCCCGCATTAAATA----------------------------------- 66471 | || ||| || ||||| || | Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502 Query 66472 -----AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 || || || ||||| || || || | ||||||| | || |||| Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442 Query 66517 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 66575 | ||||| || || ||| || | || | || || || || ||||| ||||| | | Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||||||||| | ||||| |||||| || || | | | ||| ||| | || | | Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || |||||||| |||||||| | |||||||| || |||||||| | |||| || Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACT--TGA--AATAATCGGAGAATG 66751 |||| || |||| | ||| || | |||| || | | ||| || ||||| || Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207 Query 66752 TTTCCCATTTTTAGGATTGA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 66809 || || |||| || || | ||| ||| | ||| | || || | || | Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACC 50149 Query 66810 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || || || || ||||| || || || | ||| |||| ||| || | ||| |||||||| Sbjct 50148 TTCTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCG 50089 Query 66870 GGATG 66874 || || Sbjct 50088 GGGTG 50084 >seq6 Length=242052 Score = 122 bits (134), Expect = 1e-22 Identities = 179/253 (71%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| ||| ||||||||||| | | || | ||||| || || ||||| Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || || ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATG 36333 || ||||| || || || || || || |||| ||| || ||| | | ||||| Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| ||||||| |||||||||||| | |||||| || || || ||||| | Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605 Query 36394 AAAGAGATAGTTT 36406 || || ||||| Sbjct 183604 GAAAAGGAAGTTT 183592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166391042360