Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq95 141 1e-28 seq6 125 1e-23 >seq95 Length=57217 Score = 141 bits (156), Expect = 1e-28 Identities = 758/1200 (63%), Gaps = 82/1200 (7%) Strand=Plus/Minus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || || ||||| ||||| ||||||| | | | ||| | || |||||||| || Sbjct 51267 AGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCAGTACA 51208 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||| ||||| |||||||||| || | | | ||| || ||| ||| ||||| Sbjct 51207 GAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCGGCATC 51148 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||||||| ||| | || |||||| || |||||| || | || || ||| | Sbjct 51147 CTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAACCAAA- 51089 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT----TCGTAT-TGT-GTATA 79853 | || | |||| |||| || | || | || | || ||||| | | ||| | Sbjct 51088 GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTCGTAAA 51032 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 || || || || ||||| | || ||| | | |||||||| || | |||||||| Sbjct 51031 GCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACAT 50974 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 | | ||| || ||||| | || || ||||| || ||||| || ||||| || || Sbjct 50973 AAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGC 50914 Query 79974 -TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGG 80031 || ||| ||||| | | || |||||| || || ||||| ||||| || | | Sbjct 50913 GTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATG 50856 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || | | | ||||| ||||| || || | || ||||| | | || || || ||| Sbjct 50855 AAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTG 50796 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || || || || | ||||| ||| ||| | |||| ||| | ||| ||||| ||| Sbjct 50795 TTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATA 50736 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT- 80210 || || || ||| ||||| |||| || ||| || | ||||| ||||| ||| Sbjct 50735 CCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATG 50676 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 ||| ||||| || || || || | || ||||| || || || | ||||| || Sbjct 50675 TGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTA 50617 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||| || || ||| |||||| ||||| | ||||| || ||||| ||| | || Sbjct 50616 GATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGCCG 50557 Query 80331 ACTAGTTCCCGCATTAAATA---------------------------------------- 80350 ||| || ||||| || | Sbjct 50556 GGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAATCAGTC 50497 Query 80351 AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 || || || ||||| || || || | ||||||||| || ||||| ||| Sbjct 50496 AGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGTAGGTC 50437 Query 80401 TCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 || || || || || | || | || || || || ||||| ||||| | |||||| Sbjct 50436 TCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATCATGTG 50378 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 |||||| | ||||| |||||| ||| || | | | ||| ||| | || | ||| || Sbjct 50377 CTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTT 50318 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 |||||||| |||||||| | |||||||| || |||||||| | |||| || |||| Sbjct 50317 GAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGGATATC 50258 Query 80580 CTTATATTTGTTAACTACATCCATGGTGATACT--TGA--AATAATCGGAGAATGTTTCC 80635 || |||| | ||| || | || | || | | ||| || ||||| || || | Sbjct 50257 TTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTGCTTGC 50202 Query 80636 CATTTTTAGGATTAA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 80693 | |||| || |||| ||| ||| | ||| | || || | || | || || Sbjct 50201 CGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACCTTCTT 50144 Query 80694 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || |||||||| || || || | ||| |||| || || | ||| |||||||| || || Sbjct 50143 GGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCGGGGTG 50084 >seq6 Length=242052 Score = 125 bits (138), Expect = 1e-23 Identities = 181/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||| ||||||||||| | | || || ||||| || || ||||| Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC-TGTCATG 50135 ||| ||||| || || || || || | |||| ||| || ||| | ||| ||||| Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605 Query 50196 AAAGAGATAGTTT 50208 || || ||||| Sbjct 183604 GAAAAGGAAGTTT 183592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261805857560