Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq95 141 1e-28
seq6 125 1e-23
>seq95
Length=57217
Score = 141 bits (156), Expect = 1e-28
Identities = 758/1200 (63%), Gaps = 82/1200 (7%)
Strand=Plus/Minus
Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679
||| || || ||||| ||||| ||||||| | | | ||| | || |||||||| ||
Sbjct 51267 AGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCAGTACA 51208
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
||| ||||| |||||||||| || | | | ||| || ||| ||| |||||
Sbjct 51207 GAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCGGCATC 51148
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||||||| ||| | || |||||| || |||||| || | || || ||| |
Sbjct 51147 CTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAACCAAA- 51089
Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT----TCGTAT-TGT-GTATA 79853
| || | |||| |||| || | || | || | || ||||| | | ||| |
Sbjct 51088 GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTCGTAAA 51032
Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913
|| || || || ||||| | || ||| | | |||||||| || | ||||||||
Sbjct 51031 GCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACAT 50974
Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973
| | ||| || ||||| | || || ||||| || ||||| || ||||| || ||
Sbjct 50973 AAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGC 50914
Query 79974 -TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGG 80031
|| ||| ||||| | | || |||||| || || ||||| ||||| || | |
Sbjct 50913 GTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATG 50856
Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091
|| | | | ||||| ||||| || || | || ||||| | | || || || |||
Sbjct 50855 AAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTG 50796
Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151
|| || || || || | ||||| ||| ||| | |||| ||| | ||| ||||| |||
Sbjct 50795 TTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATA 50736
Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT- 80210
|| || || ||| ||||| |||| || ||| || | ||||| ||||| |||
Sbjct 50735 CCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATG 50676
Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270
||| ||||| || || || || | || ||||| || || || | ||||| ||
Sbjct 50675 TGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTA 50617
Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330
||| || || ||| |||||| ||||| | ||||| || ||||| ||| | ||
Sbjct 50616 GATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGCCG 50557
Query 80331 ACTAGTTCCCGCATTAAATA---------------------------------------- 80350
||| || ||||| || |
Sbjct 50556 GGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAATCAGTC 50497
Query 80351 AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400
|| || || ||||| || || || | ||||||||| || ||||| |||
Sbjct 50496 AGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGTAGGTC 50437
Query 80401 TCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459
|| || || || || | || | || || || || ||||| ||||| | ||||||
Sbjct 50436 TCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATCATGTG 50378
Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519
|||||| | ||||| |||||| ||| || | | | ||| ||| | || | ||| ||
Sbjct 50377 CTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTT 50318
Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579
|||||||| |||||||| | |||||||| || |||||||| | |||| || ||||
Sbjct 50317 GAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGGATATC 50258
Query 80580 CTTATATTTGTTAACTACATCCATGGTGATACT--TGA--AATAATCGGAGAATGTTTCC 80635
|| |||| | ||| || | || | || | | ||| || ||||| || || |
Sbjct 50257 TTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTGCTTGC 50202
Query 80636 CATTTTTAGGATTAA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 80693
| |||| || |||| ||| ||| | ||| | || || | || | || ||
Sbjct 50201 CGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACCTTCTT 50144
Query 80694 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753
|| |||||||| || || || | ||| |||| || || | ||| |||||||| || ||
Sbjct 50143 GGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCGGGGTG 50084
>seq6
Length=242052
Score = 125 bits (138), Expect = 1e-23
Identities = 181/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || ||| ||| ||||||||||| | | || || ||||| || || |||||
Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078
|| ||||| || || ||||| || ||||| || ||||| || || || ||||| |||||
Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC-TGTCATG 50135
||| ||||| || || || || || | |||| ||| || ||| | ||| |||||
Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605
Query 50196 AAAGAGATAGTTT 50208
|| || |||||
Sbjct 183604 GAAAAGGAAGTTT 183592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718261805857560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |