Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 >seq6 Length=242052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||||||| | || | || || |||||| Sbjct 168807 TGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGT 168866 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| |||||| ||||||||||| ||||| || || || ||||| ||| || Sbjct 168867 TTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTC 168926 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | |||||| | || || ||||||| ||| | || |||||||| Sbjct 168927 GCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTA 168986 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 168987 AGAGTCTTGACGAAAATCTGCATA 169010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009462947280