Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq95 100 4e-16 seq156 87.8 3e-12 >seq6 Length=242052 Score = 131 bits (144), Expect = 2e-25 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 125338 ACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG 125397 |||| || ||||| | || | ||| || || ||||| | |||| |||| |||||| Sbjct 183606 ACGCTATGGACACCATCCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 183665 Query 125398 ATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCT 125457 |||| | |||| | || || |||| | || ||||| ||||| || || |||| Sbjct 183666 CTGACAAGCGATCTTGTTTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCT 183725 Query 125458 TCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGAC 125517 |||| || ||| ||| || ||||||| |||||||||||||| || |||||||| || | Sbjct 183726 TCTTCTCTGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTC 183785 Query 125518 TGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTC 125577 | || | ||||||| | || ||||| |||||||| || ||| ||||||||| || Sbjct 183786 TCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGTC 183845 Query 125578 TACTGTT 125584 | || || Sbjct 183846 TCCTCTT 183852 >seq95 Length=57217 Score = 100 bits (110), Expect = 4e-16 Identities = 312/478 (65%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| || || ||||| || || || || || | ||| |||| | || || Sbjct 50773 CGATACGTTGACCAAGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCC 50832 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || ||||| || || || | | || ||| ||| || |||| | Sbjct 50833 TGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 50892 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| | || | || || || |||||| | || ||| | ||||||||||| ||| | Sbjct 50893 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAA 50952 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| |||||| ||| ||||| |||| || || || || |||| | Sbjct 50953 TCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATAC 51012 Query 97104 GGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 || ||||| |||||| ||| ||| | ||||||| ||| | | | |||| Sbjct 51013 GGAGAAGAATTTGAG---AAGCTTTACGAGAGCTACGAGAGGCAGG---GTAAGGGGAGA 51066 Query 97161 CGA---GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 | || | || | |||| || ||| || ||| | ||||||| ||||||||| Sbjct 51067 AAAACTATCAAAGC-CCAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGG 51125 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 || ||||| || |||||| ||| || ||| ||||||| ||| | || Sbjct 51126 TGTCCCTTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGG 51185 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| ||| | ||||| || || |||||| | ||||| | ||||| || ||| Sbjct 51186 TACCATTAAGTCCAGTAATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAG 51243 >seq156 Length=42092 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 ||| | || || || |||||||||||| | ||| | || || ||||| || || ||| Sbjct 33877 AAACTTTCTTGTTTGATGTATCAGAGGTCTTGTGACTTAGGTCTTGGTGTCCCATTCAAC 33936 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419 ||||| || | | || || || |||||||| |||||||||| | ||| | |||| Sbjct 33937 ATTGCGTCTTACGCCCTCTTAACCCATATGATTGCCCACATTACCGACACTG-AGCCGCA 33995 Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||||| | | ||| || || || || || ||||| ||||| | |||||||| | Sbjct 33996 TGAGTTTATTCTACA-AATGGGAGATGCGCATGTGTACAGGGATCACGTTGAGCCATTGA 34054 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGA 70504 || |||||| ||| ||||||| ||| Sbjct 34055 AGACGCAACTAGAAAGGGAGCCTAGA 34080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051983936040