Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 3e-26
seq258 105 2e-17
>seq6
Length=242052
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || || || || ||||| || ||||||| ||||||||
Sbjct 169311 ACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTCA 169370
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| ||||| || ||||||| | ||| || |||||||| || ||||| || ||||||
Sbjct 169371 AGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGA 169430
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || ||||| || | ||| || | || ||||| || || || || ||
Sbjct 169431 ATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTTG 169490
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || ||||||||
Sbjct 169491 CCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 123 bits (136), Expect = 6e-23
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| ||||| | ||||| ||| ||||| | || ||||| ||||| || | | || |||
Sbjct 169116 TAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGA 169175
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || ||||| |||||||||||||| || || ||||| || | || || |
Sbjct 169176 TCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAA 169235
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || ||||| || ||||||||||| || ||||| || || || || ||||||||
Sbjct 169236 GACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291
Score = 111 bits (122), Expect = 4e-19
Identities = 130/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||| || ||||| || || ||||| || || || |||||||| || | | ||| ||
Sbjct 169623 TAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 169682
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||| ||||| | || ||||| || | ||| ||| |
Sbjct 169683 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAA 169742
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || || || || ||||||||||| || || || || || || ||||||||
Sbjct 169743 GACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || ||||| | ||| || || |||||||| |||
Sbjct 168813 GTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 168872
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | || ||||||||||| || || || || ||||||||||| || ||
Sbjct 168873 GCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 168932
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || | || || || || || || || || || ||||| ||
Sbjct 168933 ACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGTC 168992
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 168993 TTGACGAAAATCTGCAT 169009
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200
||||| || || || |||||||| ||||| || || ||||| ||| | ||||| ||| |
Sbjct 183701 GCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTCCATCTTCTGGCTC 183760
Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260
||||| |||| || ||||| || | || ||||||||||| | || | |||||
Sbjct 183761 AAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAG 183820
Query 269261 GGTTTACACTGCGACTTCGCTTGT 269284
||| | ||| |||||| || |||
Sbjct 183821 GGTCTCCACACCGACTTTGCCTGT 183844
>seq258
Length=65905
Score = 105 bits (116), Expect = 2e-17
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 269132 AGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATC 269191
||| | || |||||||| || ||||| || |||||||| ||||| ||||| ||||||
Sbjct 13756 AGGCTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCTATC 13697
Query 269192 TTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGC 269251
|| ||||||||||| || || | ||||| ||| | || ||||| ||||| ||||| ||
Sbjct 13696 TTCTGGTTGAAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGATCAGT 13637
Query 269252 AGGGACGAAGG 269262
||||| || ||
Sbjct 13636 AGGGATGAGGG 13626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151386907964532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |