Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 >seq6 Length=242052 Score = 136 bits (150), Expect = 4e-27 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| || ||||| || | ||| |||||| | || || || |||||| || Sbjct 168806 GTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGG--AAAGAGTACGACCATCCTCAAGT 168863 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| || ||||||| |||| ||||||||| ||||| ||||| || ||||| | ||| Sbjct 168864 TGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATC 168923 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || |||||||| | ||| ||||||| | ||||| |||| ||||||||||| || Sbjct 168924 TTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCG 168983 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || || |||||||| Sbjct 168984 GTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || | || || |||||||| | ||| || ||| | ||| | Sbjct 169305 CGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCG 169364 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || |||||| | || ||||||| ||||| || |||||||||||||| ||| Sbjct 169365 TCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 169424 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | ||| ||||||| | || || |||| |||||| Sbjct 169425 TCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATG 169484 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || |||||||| || || || |||||||| Sbjct 169485 GTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| |||||| ||||||| |||| ||||||||| |||||||||||||| || Sbjct 169136 ATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGATCAGGAGGAATACCTTCCTT 169195 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || |||||||| | ||| ||||||| ||||| |||| || || Sbjct 169196 ATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAAGACTCGACCTCAAGAGTAAT 169255 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || || || || |||||||| Sbjct 169256 AGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286834764440