Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq6 136 4e-27
>seq6
Length=242052
Score = 136 bits (150), Expect = 4e-27
Identities = 155/206 (75%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861
||| | ||| || ||||| || | ||| |||||| | || || || |||||| ||
Sbjct 168806 GTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGG--AAAGAGTACGACCATCCTCAAGT 168863
Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921
||||| || ||||||| |||| ||||||||| ||||| ||||| || ||||| | |||
Sbjct 168864 TGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATC 168923
Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981
|| |||||||| | ||| ||||||| | ||||| |||| ||||||||||| ||
Sbjct 168924 TTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCG 168983
Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||| || || || ||||||||
Sbjct 168984 GTAAGAGTCTTGACGAAAATCTGCAT 169009
Score = 122 bits (134), Expect = 8e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| || | || | || || |||||||| | ||| || ||| | ||| |
Sbjct 169305 CGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCG 169364
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || || || |||||| | || ||||||| ||||| || |||||||||||||| |||
Sbjct 169365 TCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 169424
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || |||||||| | ||| ||||||| | || || |||| ||||||
Sbjct 169425 TCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATG 169484
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || |||||||| || || || ||||||||
Sbjct 169485 GTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 120 bits (132), Expect = 3e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||| ||| |||||| ||||||| |||| ||||||||| |||||||||||||| ||
Sbjct 169136 ATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGATCAGGAGGAATACCTTCCTT 169195
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||| || |||||||| | ||| ||||||| ||||| |||| || ||
Sbjct 169196 ATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAAGACTCGACCTCAAGAGTAAT 169255
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| ||||| || || || || ||||||||
Sbjct 169256 AGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448286834764440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |