Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq95 141 1e-28
seq6 140 4e-28
>seq95
Length=57217
Score = 141 bits (156), Expect = 1e-28
Identities = 760/1205 (63%), Gaps = 82/1205 (7%)
Strand=Plus/Minus
Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951
|||| ||| || || ||||| ||||| ||||||| | | | ||| | || || |||
Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213
Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011
|| || |||||||| |||| || || || | | | ||| || ||| |||
Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153
Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071
|||||||||||| ||| | || |||||| || |||||| || | || || |
Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093
Query 63072 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGT 63125
|| | | || | |||| |||| ||| | || |||| | || ||||| |
Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037
Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185
||| | || || || || ||||| | || | | | | |||||||| ||| | |||
Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979
Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245
||||| | | ||| || || || | || || ||||| || ||||| || |||||
Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919
Query 63246 AGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 63303
|| || || ||| ||||| | | || ||||| || || ||||| ||||| |
Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861
Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363
| | ||| | | | ||||| ||||| || || | || ||||| | | ||||| |
Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801
Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423
| ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| ||||
Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741
Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483
| |||||||| || ||| |||||||||| || ||| || | ||||| |||||
Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681
Query 63484 TAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542
||| ||| ||||| || || || || | || ||||| || || || | ||
Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622
Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602
|| |||||||| || ||| |||||| ||||| | ||||| || ||||| |||
Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562
Query 63603 TGACGACTAGTTCCCGCATTAAATA----------------------------------- 63627
| || ||| || ||||| || |
Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502
Query 63628 -----AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672
|| || || ||||| || || || | ||||||| | || ||||
Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442
Query 63673 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63731
| ||||| || || ||| || | || | || || || || ||||| ||||| | |
Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383
Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791
||||||||||| | ||||| |||||| || || | | | ||| ||| | || | |
Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323
Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851
|| || |||||||| |||||||| | |||||||| || |||||||| | |||| ||
Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263
Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACT--TGA--AATAATCGGAGAATG 63907
|||| || |||| | | | || | || | || | | ||| || ||||| ||
Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207
Query 63908 TTTCCCATTTTTAGGATTAA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 63965
|| || |||| || |||| ||| ||| | ||| | || || | || |
Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACC 50149
Query 63966 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025
|| || || |||||||| || || || | ||| |||| || || ||||| ||||||||
Sbjct 50148 TTCTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCG 50089
Query 64026 GGATG 64030
|| ||
Sbjct 50088 GGGTG 50084
>seq6
Length=242052
Score = 140 bits (154), Expect = 4e-28
Identities = 184/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||| ||| ||||||||||| | | || || ||||| || || |||||
Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| || || ||||| || ||||| || ||||| ||||| || ||||| |||||
Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC-TGTCATG 33479
||| ||||| || ||||| || || || |||| ||| || ||| | ||| |||||
Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605
Query 33540 AAAGAGATAGTTT 33552
|| || |||||
Sbjct 183604 GAAAAGGAAGTTT 183592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622941134051640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |