Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq95 268 2e-66 seq256 86.0 2e-11 >seq95 Length=57217 Score = 268 bits (296), Expect = 2e-66 Identities = 657/993 (66%), Gaps = 6/993 (1%) Strand=Plus/Plus Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 |||||| || |||| || |||||||| || |||||||| || |||||||| || Sbjct 50541 CAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAGGATGA 50600 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 |||||| || ||||||| || || || |||| |||||||| || ||||||| || || Sbjct 50601 TTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACCGCTGG 50660 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGG 363752 || |||||| | || |||||| | ||||| || | |||||| ||| || Sbjct 50661 TGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAA 50720 Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 || ||||| || || | |||| ||||| || | | |||| ||||| | ||||| Sbjct 50721 CGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCGATACGT 50780 Query 363813 CGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 ||||| ||||| ||||| || || || || || ||||| ||||| || || Sbjct 50781 TGACCAAGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCCTGGCACGC 50840 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACG 363932 ||| | ||||| || |||| | |||| ||| || || ||||| | || || || Sbjct 50841 TGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCG 50900 Query 363933 TGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAA 363992 |||||| ||||| || || ||| | | || | ||| |||||||| || || | | | Sbjct 50901 TGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAATCCGATGG 50960 Query 363993 GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 | | ||| | || | || || || ||||| || ||| |||| |||| || || || Sbjct 50961 GGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATACGGAGAAGA 51020 Query 364053 CTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGC 364112 | || || ||||| | || || | |||| |||| | || || || || Sbjct 51021 ATTTGAGAAGCTTTACGAGAGCTACGAGAGGCAGGGTAAGGGGAGAAAAACTATCAAAGC 51080 Query 364113 ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTT 364172 |||||||| ||||| || ||| | || | |||| ||||| || || || || | Sbjct 51081 CCAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGGTGTCCCTTACATCTG 51140 Query 364173 GTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAG 364232 || || ||| | |||| |||||||||||| ||||||||||||| ||| || || Sbjct 51141 TTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATTAAGTCCAG 51200 Query 364233 CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCT 364292 || || ||||| || ||||| || || | ||||||| ||| |||||| |||||||| Sbjct 51201 TAATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAGGTTGCCGTCTGTAACCT 51260 Query 364293 TGCGTCGATCGCGCTTCCGGCGTTTGTAAA---AGATGGT-ACTTTT--GACCACCAGCA 364346 || || | || ||||| || || || | || || | | | ||| | || | Sbjct 51261 CGCTTCTCTTGCTCTTCCTGCCTTCGTGGATCTTGAACGTCGCGTCTACGACTTCAAGAA 51320 Query 364347 TCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTA 364406 || |||| | ||| | || | | || ||||||| || || | || || Sbjct 51321 GCTGCATGAGATTACCAAGGTTGTTGCCAAGAACCTCGACACTGTCATTACCCGTAACTA 51380 Query 364407 TTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGT 364466 |||||| | ||||| ||| || || ||||| ||||| || |||| |||||||| Sbjct 51381 CTATCCAGTGCCTGAGGCCCGCAACTCCAACATGCGCCATCGACCTGTTGGCCTTGGTGT 51440 Query 364467 ACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCG 364526 || || |||||||||| ||| ||| || ||| | || || || | ||| || | Sbjct 51441 CCAAGGTCTCGCTGACGCTTTCATGGCCCTTCGCATGCCGTTCGACTCTCTTGAGGCCAG 51500 Query 364527 TGTTCTAAATAAGGAGATCTTTGAAACAATGTA 364559 | || |||| ||||||| || || || || Sbjct 51501 GGAGCTCAATATCCAGATCTTCGAGACCATTTA 51533 >seq256 Length=23044 Score = 86.0 bits (94), Expect = 2e-11 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 371968 CAAAGCTCGTGAATAAACCCCTGTCAATAGATGACTGGTTAAGTAGAACAGAGTCGTCCT 372027 ||| | ||| ||| | ||| | ||| || ||||||||||| | | |||||||| |||| Sbjct 11717 CAACGATCG-GAAAAGACCGCGGTCGATTGATGACTGGTTCATAATTACAGAGTCTTCCT 11775 Query 372028 GATTAAAACCAGAATAACACATGATGGCAACGAT 372061 |||| ||||||||||||||||||||||||| || Sbjct 11776 GATTGTAACCAGAATAACACATGATGGCAACAAT 11809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340591309178