Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 2e-25
seq152 87.8 2e-12
>seq6
Length=242052
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| || | ||| | ||| ||||||||||| |||||||| |||
Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || || ||||| || ||| | ||||| ||||||||||| |||||
Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| || ||| ||||| | || | || || | |||||| |
Sbjct 169413 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 169472
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | |||||| ||||| ||||| || ||||||||||||||
Sbjct 169473 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | || |||||||| || ||||||||||||
Sbjct 168783 CCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAA 168842
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| || || || || || |||| || || ||||| || ||||||
Sbjct 168843 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGG 168902
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | || || | ||||||||
Sbjct 168903 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACT 168962
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | |||||| ||||| ||||| || ||||||||||||||
Sbjct 168963 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| || |||||||| || || |||| || ||||||||||| |||||||| || || |||
Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || ||||| | || | || |||| ||||| | |||| || |
Sbjct 169704 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTGATA 169763
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| |||||||| || || || |||||||||||||||
Sbjct 169764 GTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATG 169799
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | ||| | || ||||| |||||||||||||| |||
Sbjct 168496 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAA 168555
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||||| ||||| || || | || | || ||||| || || |||
Sbjct 168556 AGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGG 168615
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||||| | || | |||||| | || ||||
Sbjct 168616 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGACC 168675
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGA 131214
|| | |||| || ||||| || |||
Sbjct 168676 TCAAGAGTAATTGTCTTACCCGTAAGA 168702
>seq152
Length=36388
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138
|||||| |||||||| || ||| |||| |||||||||||||| || ||||| || || ||
Sbjct 23076 GTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATACCCTCCTT 23135
Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
||| ||| || ||||| | || | || |||| |||||||| || | ||| |
Sbjct 23136 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 23195
Query 131199 GGTTTTACCGGTTAGA 131214
||| || ||||| |||
Sbjct 23196 GGTCTTTCCGGTAAGA 23211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472008203775360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |