Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq152 87.8 2e-12 >seq6 Length=242052 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| ||||||||||| |||||||| ||| Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || ||||| || ||| | ||||| ||||||||||| ||||| Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||||| | || | || || | |||||| | Sbjct 169413 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 169472 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| ||||| || |||||||||||||| Sbjct 169473 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||||||| Sbjct 168783 CCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAA 168842 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || || || || || |||| || || ||||| || |||||| Sbjct 168843 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGG 168902 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || || | |||||||| Sbjct 168903 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACT 168962 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| ||||| || |||||||||||||| Sbjct 168963 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || || |||| || ||||||||||| |||||||| || || ||| Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| ||||| | |||| || | Sbjct 169704 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTGATA 169763 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || |||||||| || || || ||||||||||||||| Sbjct 169764 GTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATG 169799 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||| |||||||||||||| ||| Sbjct 168496 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAA 168555 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||||| ||||| || || | || | || ||||| || || ||| Sbjct 168556 AGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGG 168615 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | |||||| | || |||| Sbjct 168616 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGACC 168675 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGA 131214 || | |||| || ||||| || ||| Sbjct 168676 TCAAGAGTAATTGTCTTACCCGTAAGA 168702 >seq152 Length=36388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || ||| |||| |||||||||||||| || ||||| || || || Sbjct 23076 GTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATACCCTCCTT 23135 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | || |||| |||||||| || | ||| | Sbjct 23136 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 23195 Query 131199 GGTTTTACCGGTTAGA 131214 ||| || ||||| ||| Sbjct 23196 GGTCTTTCCGGTAAGA 23211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008203775360