Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq37 140 2e-28
seq621 114 9e-21
seq6 107 1e-18
seq724 87.8 1e-12
>seq37
Length=8170
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3360 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3419
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 3420 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3454
Score = 91.5 bits (100), Expect = 1e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 5352 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGNACTTGTTCGCTATCGGTCTTCC 5411
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||| |||
Sbjct 5412 ACCAATATTTAGCTTTA 5428
>seq621
Length=513
Score = 114 bits (126), Expect = 9e-21
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||
Sbjct 116 AAGCCCGTTCCCTTGTCTGTGGTTTCGCTAGATAGTAGAGAGGGACAGTGGGAATCTCGT 57
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
||| || |||||| | |||||||||||||||||
Sbjct 56 TAACCCATTCATGAGAGTCACTAATTAGATGAC 24
>seq6
Length=242052
Score = 107 bits (118), Expect = 1e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | || | |||||||||| ||| |||||||| ||||| || ||
Sbjct 168495 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGA 168554
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| ||| | || |||| ||| ||||||||||| || || ||||| ||||||| |||
Sbjct 168555 AAGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGG 168614
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||||| ||||| || || ||| ||||| | || ||||| | | ||| ||
Sbjct 168615 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGAC 168674
Query 38270 TTCTAATGTAATAGTTTTACCCGT 38293
|| | ||||| || ||||||||
Sbjct 168675 CTCAAGAGTAATTGTCTTACCCGT 168698
>seq724
Length=213
Score = 87.8 bits (96), Expect = 1e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 184 CTCTCTNNCCAAAGTGCTTTTCATCTTTCCCTCACTGTACTTGTTCGCTATCGGTCTGCC 125
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||| |||
Sbjct 124 ACCAATATTTAGCTTTA 108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944019990349
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |