Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq37 140 2e-28 seq621 114 9e-21 seq6 107 1e-18 seq724 87.8 1e-12 >seq37 Length=8170 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3360 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3419 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3420 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||| | Sbjct 5352 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGNACTTGTTCGCTATCGGTCTTCC 5411 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 5412 ACCAATATTTAGCTTTA 5428 >seq621 Length=513 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| Sbjct 116 AAGCCCGTTCCCTTGTCTGTGGTTTCGCTAGATAGTAGAGAGGGACAGTGGGAATCTCGT 57 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||| || |||||| | ||||||||||||||||| Sbjct 56 TAACCCATTCATGAGAGTCACTAATTAGATGAC 24 >seq6 Length=242052 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | |||||||||| ||| |||||||| ||||| || || Sbjct 168495 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGA 168554 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | ||| | || |||| ||| ||||||||||| || || ||||| ||||||| ||| Sbjct 168555 AAGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGG 168614 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| ||||| || || ||| ||||| | || ||||| | | ||| || Sbjct 168615 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGAC 168674 Query 38270 TTCTAATGTAATAGTTTTACCCGT 38293 || | ||||| || |||||||| Sbjct 168675 CTCAAGAGTAATTGTCTTACCCGT 168698 >seq724 Length=213 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||| | Sbjct 184 CTCTCTNNCCAAAGTGCTTTTCATCTTTCCCTCACTGTACTTGTTCGCTATCGGTCTGCC 125 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 124 ACCAATATTTAGCTTTA 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944019990349