Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq95 132 6e-26 seq6 125 9e-24 >seq95 Length=57217 Score = 132 bits (146), Expect = 6e-26 Identities = 758/1205 (63%), Gaps = 82/1205 (7%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||| || || ||||| ||||| ||||||| | | | ||| | || || ||| Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 || || |||||||| |||| ||||| || | | | ||| || ||| ||| Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 |||||||||||| ||| | || |||||| || |||||| || | || || | Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093 Query 62927 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT----TCGTA--TAGT 62980 || | | || | |||| |||| ||| | || | || | || ||||| | Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037 Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 ||| | || || || || ||||| | || | | | || |||||||| ||| | ||| Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979 Query 63041 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63100 ||||| | | ||| || || || | || || ||||| || ||||| || ||||| Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919 Query 63101 AGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 63158 || || || ||| ||||| | | || ||||| || || ||||| ||||| | Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861 Query 63159 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63218 | | ||| | | | ||||| ||||| || || | || ||||| | | ||||| | Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801 Query 63219 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63278 | ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| |||| Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741 Query 63279 TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTAC 63338 | ||||| || || ||| ||||| || | || ||| || | ||||| ||||| Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681 Query 63339 TAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 63397 ||| ||| ||||| || || || || | || ||||| || || || | ||| Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622 Query 63398 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63457 || ||||| || || || ||||||| ||||| | ||||| || ||||| ||| Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562 Query 63458 TGACGACTAGTTCCCGCATTAAATA----------------------------------- 63482 | || ||| || ||||| || | Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502 Query 63483 -----AG----------GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 || || || ||||| || || || | ||||||| | || |||| Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442 Query 63528 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63586 | ||||| || || ||| || | || | || || || || ||||| ||||| | | Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||||| | ||||| |||||| || || | | | ||| ||| | || | | Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || |||||||| |||||||| | |||||||| || |||||||| | |||| || Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263 Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACT--TGA--AATAATAGGAAAATG 63762 |||| || |||| | ||| || | |||| || | | ||| || ||| | || Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207 Query 63763 TTTCCCATTTTTAGGATTGA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 63820 || || |||| || || | ||| ||| | ||| | || || | || | Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACC 50149 Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || || ||||| || || || | ||| |||| ||| || ||||| |||||||| Sbjct 50148 TTCTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCG 50089 Query 63881 GGATG 63885 || || Sbjct 50088 GGGTG 50084 >seq6 Length=242052 Score = 125 bits (138), Expect = 9e-24 Identities = 181/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||| ||| ||||||||||| | | || | ||||| || || ||||| Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| || || ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC-TGTCATG 32836 || ||||| || || || || || || |||| ||| || ||| | ||| ||||| Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| ||||||| |||||||||||| | |||||| || || || ||||| | Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605 Query 32897 AAAGAGATAGTTT 32909 || || ||||| Sbjct 183604 GAAAAGGAAGTTT 183592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625830008400