Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq95 132 6e-26
seq6 125 9e-24
>seq95
Length=57217
Score = 132 bits (146), Expect = 6e-26
Identities = 758/1205 (63%), Gaps = 82/1205 (7%)
Strand=Plus/Minus
Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806
|||| ||| || || ||||| ||||| ||||||| | | | ||| | || || |||
Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213
Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866
|| || |||||||| |||| ||||| || | | | ||| || ||| |||
Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153
Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926
|||||||||||| ||| | || |||||| || |||||| || | || || |
Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093
Query 62927 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT----TCGTA--TAGT 62980
|| | | || | |||| |||| ||| | || | || | || ||||| |
Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037
Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040
||| | || || || || ||||| | || | | | || |||||||| ||| | |||
Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979
Query 63041 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63100
||||| | | ||| || || || | || || ||||| || ||||| || |||||
Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919
Query 63101 AGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 63158
|| || || ||| ||||| | | || ||||| || || ||||| ||||| |
Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861
Query 63159 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63218
| | ||| | | | ||||| ||||| || || | || ||||| | | ||||| |
Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801
Query 63219 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63278
| ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| ||||
Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741
Query 63279 TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTAC 63338
| ||||| || || ||| ||||| || | || ||| || | ||||| |||||
Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681
Query 63339 TAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 63397
||| ||| ||||| || || || || | || ||||| || || || | |||
Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622
Query 63398 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63457
|| ||||| || || || ||||||| ||||| | ||||| || ||||| |||
Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562
Query 63458 TGACGACTAGTTCCCGCATTAAATA----------------------------------- 63482
| || ||| || ||||| || |
Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502
Query 63483 -----AG----------GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
|| || || ||||| || || || | ||||||| | || ||||
Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442
Query 63528 ACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 63586
| ||||| || || ||| || | || | || || || || ||||| ||||| | |
Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646
||||||||||| | ||||| |||||| || || | | | ||| ||| | || | |
Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323
Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706
|| || |||||||| |||||||| | |||||||| || |||||||| | |||| ||
Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263
Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACT--TGA--AATAATAGGAAAATG 63762
|||| || |||| | ||| || | |||| || | | ||| || ||| | ||
Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207
Query 63763 TTTCCCATTTTTAGGATTGA--CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 63820
|| || |||| || || | ||| ||| | ||| | || || | || |
Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGA--AGATCATGCACAACGGCTGAGAAAACC 50149
Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880
|| || || || ||||| || || || | ||| |||| ||| || ||||| ||||||||
Sbjct 50148 TTCTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCG 50089
Query 63881 GGATG 63885
|| ||
Sbjct 50088 GGGTG 50084
>seq6
Length=242052
Score = 125 bits (138), Expect = 9e-24
Identities = 181/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || ||| ||| ||||||||||| | | || | ||||| || || |||||
Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779
|| ||||| || || ||||| || ||||| || ||||| || || || ||||| |||||
Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC-TGTCATG 32836
|| ||||| || || || || || || |||| ||| || ||| | ||| |||||
Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605
Query 32897 AAAGAGATAGTTT 32909
|| || |||||
Sbjct 183604 GAAAAGGAAGTTT 183592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633625830008400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |