Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq6 132 4e-26
>seq6
Length=242052
Score = 132 bits (146), Expect = 4e-26
Identities = 133/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| ||||| || | |||||||| || ||| | | |||||| | ||| || ||||
Sbjct 168698 ACGGGTAAGACAATTACTCTTGAGGTCGAATCTAGCGATACAATCGACAATGTCAAGGCC 168639
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || ||||||||||| ||||| || |||||||| ||||| || || |||||||| ||
Sbjct 168638 AAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTGCCGGAAAG 168579
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| |||||||| || ||| | ||||| ||||||||||||||||| |||||
Sbjct 168578 CAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCAC 168526
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || ||| | ||||| ||||| ||||||||||||| || || |
Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || ||||| |||||||||||||| || || |||||
Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 168890
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| | || ||||| || ||||| | |||||| || || | ||||||||||||
Sbjct 168889 CAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAAC 168830
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 168829 ATCCAGAAGGAGTCAAC 168813
Score = 91.5 bits (100), Expect = 1e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | |||||||| || ||||||| |||||||| | ||
Sbjct 169798 ATGCAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCTTCC 169739
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || |||||||||||||| || || || ||
Sbjct 169738 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 169679
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
|| || | || ||||| || || ||| | || ||| | | || | ||||| ||||
Sbjct 169678 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTTTCCGACTACA 169621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419724015076135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |