Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq21 140 7e-28 seq81 116 8e-21 seq9 114 3e-20 >seq21 Length=50189 Score = 140 bits (154), Expect = 7e-28 Identities = 239/347 (69%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 218509 CCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGT 218568 ||| || | || || || |||||||||| ||||| ||||| | |||| || Sbjct 7431 CCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTGTTCTCCATGGCTGATAATATCCGC 7490 Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| ||||| || || ||||| || ||||| ||| | ||||||| Sbjct 7491 TCGATTCCGTCCGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGT 7550 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||||| || || | |||||||||||||||||| || ||||| || || || Sbjct 7551 TTCAAGCGAAATCTCACCAAGGAAATTAAGGTCGCTCAGCTTGTCGGTTACGTTTCGGAG 7610 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 | ||| || ||||| ||||| ||| || | | |||| | ||| | ||||| Sbjct 7611 AAGACTGCATATCATCATGGTGAAGCTAGTTTGACGTCTACCATCATCGGCTTAGCACAA 7670 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||| ||| ||||||||||| || || || | |||||||||||||||||| |||| Sbjct 7671 AACTTTGTCGGCAGTAACAATATCAATCTGTTAGATCCCAACGGTCAGTTTGGTACTCGA 7730 Query 218809 CTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 || ||||| || || ||||||||| | |||||||| ||||| Sbjct 7731 CTTGCAGGTGGTAAAGACGCTGCTTCTGCTCGTTATATCTTCACAAA 7777 >seq81 Length=240933 Score = 116 bits (128), Expect = 8e-21 Identities = 141/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| | ||||| ||||| ||||||||||| |||||||| ||||| ||||||| || ||| Sbjct 65020 GGTATTATTGGTCCCAACGGTGCGGGTAAATCTACCCTCATCAAGCTCCTGACCGGTGAG 65079 Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || | | || || || || || |||||||| | || | | |||||| Sbjct 65080 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCATCCTGCTCTTCGTGTCGGCTACGTC 65136 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 ||||||||||| |||||||||||| | | ||| |||||| |||| || |||||||| Sbjct 65137 GCTCAGCACGCGTTCCACCACATCAACCAGCACTTGGACAAGACTGCTGTGCAATACATC 65196 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 65197 CAGTGGCGATA 65207 >seq9 Length=202349 Score = 114 bits (126), Expect = 3e-20 Identities = 137/184 (74%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | ||||| |||||||| |||| |||| ||||| |||||| | Sbjct 51446 TTGGTCCCAACGGTTCTGGTAAATCTACCCTTGTCAAGCTCCTTACTGGTGAGACCGAAC 51387 Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | | || | |||| | | |||||||| || ||| || || | ||||||||| |||| Sbjct 51386 CGAACCTTGGTGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAGC 51327 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||||||||||||||| || ||||| || ||| |||||| | | ||||| | |||| Sbjct 51326 ACGCTTTCCACCACATTGACAACCATCTTGACTCTACTCCTCTCGAGTACATGCTTTGGC 51267 Query 280354 GCTA 280357 | || Sbjct 51266 GATA 51263 Score = 113 bits (124), Expect = 9e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 |||||||| || |||||||||||||||||||| || || | || |||||||| | Sbjct 51927 GGTTCTCTTTCTGGTGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCCATTCTTTTCAAG 51868 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| ||||||||| |||| ||||| | |||| Sbjct 51867 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 51808 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || | ||| || ||| ||| | ||| | | ||| ||||||||||||||||||| Sbjct 51807 CTTATCAACTATCTCACCTCTCTCACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 51749 Query 279878 TGGCTTCCT 279886 || |||||| Sbjct 51748 TGACTTCCT 51740 Score = 87.8 bits (96), Expect = 4e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC- 280770 ||| || ||||||||||| || |||||||| || | ||| | || || ||| |||| Sbjct 50840 CATGCGAGGTCTTTCTGGTGGTCAGAAGGTGAAGGTCGTCCTTGGTGCCGCTACATGGCG 50781 Query 280771 AACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||| ||| | ||| |||||||||||||||||||||||| ||||| || Sbjct 50780 AAGACCC-CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGA 50730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826541225139