Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq21 140 7e-28
seq81 116 8e-21
seq9 114 3e-20
>seq21
Length=50189
Score = 140 bits (154), Expect = 7e-28
Identities = 239/347 (69%), Gaps = 0/347 (0%)
Strand=Plus/Plus
Query 218509 CCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGT 218568
||| || | || || || |||||||||| ||||| ||||| | |||| ||
Sbjct 7431 CCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTGTTCTCCATGGCTGATAATATCCGC 7490
Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628
|| ||||| ||||| || || ||||| || ||||| ||| | |||||||
Sbjct 7491 TCGATTCCGTCCGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGT 7550
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
|||||||| || || | |||||||||||||||||| || ||||| || || ||
Sbjct 7551 TTCAAGCGAAATCTCACCAAGGAAATTAAGGTCGCTCAGCTTGTCGGTTACGTTTCGGAG 7610
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748
| ||| || ||||| ||||| ||| || | | |||| | ||| | |||||
Sbjct 7611 AAGACTGCATATCATCATGGTGAAGCTAGTTTGACGTCTACCATCATCGGCTTAGCACAA 7670
Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808
||| ||| ||||||||||| || || || | |||||||||||||||||| ||||
Sbjct 7671 AACTTTGTCGGCAGTAACAATATCAATCTGTTAGATCCCAACGGTCAGTTTGGTACTCGA 7730
Query 218809 CTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855
|| ||||| || || ||||||||| | |||||||| |||||
Sbjct 7731 CTTGCAGGTGGTAAAGACGCTGCTTCTGCTCGTTATATCTTCACAAA 7777
>seq81
Length=240933
Score = 116 bits (128), Expect = 8e-21
Identities = 141/191 (74%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| | ||||| ||||| ||||||||||| |||||||| ||||| ||||||| || |||
Sbjct 65020 GGTATTATTGGTCCCAACGGTGCGGGTAAATCTACCCTCATCAAGCTCCTGACCGGTGAG 65079
Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|| | | || || || || || |||||||| | || | | ||||||
Sbjct 65080 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCATCCTGCTCTTCGTGTCGGCTACGTC 65136
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
||||||||||| |||||||||||| | | ||| |||||| |||| || ||||||||
Sbjct 65137 GCTCAGCACGCGTTCCACCACATCAACCAGCACTTGGACAAGACTGCTGTGCAATACATC 65196
Query 280347 CAGTGGCGCTA 280357
|||||||| ||
Sbjct 65197 CAGTGGCGATA 65207
>seq9
Length=202349
Score = 114 bits (126), Expect = 3e-20
Identities = 137/184 (74%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236
|||| ||||| ||| | ||||| |||||||| |||| |||| ||||| |||||| |
Sbjct 51446 TTGGTCCCAACGGTTCTGGTAAATCTACCCTTGTCAAGCTCCTTACTGGTGAGACCGAAC 51387
Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293
| | || | |||| | | |||||||| || ||| || || | ||||||||| ||||
Sbjct 51386 CGAACCTTGGTGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAGC 51327
Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353
|||||||||||||||| || ||||| || ||| |||||| | | ||||| | ||||
Sbjct 51326 ACGCTTTCCACCACATTGACAACCATCTTGACTCTACTCCTCTCGAGTACATGCTTTGGC 51267
Query 280354 GCTA 280357
| ||
Sbjct 51266 GATA 51263
Score = 113 bits (124), Expect = 9e-20
Identities = 140/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|||||||| || |||||||||||||||||||| || || | || |||||||| |
Sbjct 51927 GGTTCTCTTTCTGGTGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCCATTCTTTTCAAG 51868
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| |||| |||| || ||||| ||||||||| |||| ||||| | ||||
Sbjct 51867 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 51808
Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
|| | ||| || ||| ||| | ||| | | ||| |||||||||||||||||||
Sbjct 51807 CTTATCAACTATCTCACCTCTCTCACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 51749
Query 279878 TGGCTTCCT 279886
|| ||||||
Sbjct 51748 TGACTTCCT 51740
Score = 87.8 bits (96), Expect = 4e-12
Identities = 88/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC- 280770
||| || ||||||||||| || |||||||| || | ||| | || || ||| ||||
Sbjct 50840 CATGCGAGGTCTTTCTGGTGGTCAGAAGGTGAAGGTCGTCCTTGGTGCCGCTACATGGCG 50781
Query 280771 AACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| |||| ||| | ||| |||||||||||||||||||||||| ||||| ||
Sbjct 50780 AAGACCC-CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGA 50730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027826541225139
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |