Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6 176 8e-39 seq9 96.9 6e-15 seq152 95.1 2e-14 >seq6 Length=242052 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || |||||||| ||||||||||| || ||||| Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || | || || ||||| || ||| Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 169413 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 169472 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || || ||||||||||| |||||||| Sbjct 169473 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| |||||||| Sbjct 168783 CCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAA 168842 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || || || || | || ||| || || || || Sbjct 168843 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGG 168902 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||| ||||| | || || ||| Sbjct 168903 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACT 168962 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || || ||||||||||| |||||||| Sbjct 168963 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 134 bits (148), Expect = 3e-26 Identities = 145/188 (77%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||||||||| ||||| || ||||| || || | ||||| |||| Sbjct 168515 CAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCCTCTA 168574 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| ||||| || ||||||| ||| || ||||| || || |||||||||||||| | Sbjct 168575 GTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTCTTGGA 168634 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| |||||||| ||||| || || ||| ||||| || || | || || || || Sbjct 168635 TCTTGGCCTTGACATTGTCGATTGTATC-GCTAGATTCGACCTCAAGAGTAATTGTCTTA 168693 Query 68433 CCCGTGAG 68440 ||||| || Sbjct 168694 CCCGTAAG 168701 Score = 132 bits (146), Expect = 9e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || ||||| |||||||| | |||||| || || || || | || || ||| Sbjct 169623 TAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 169682 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||||||||| | Sbjct 169683 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAA 169742 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||||| || || || ||||||||||||||||| |||||||| Sbjct 169743 GACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | || | |||||||| |||||||| ||||| || || | || ||| || Sbjct 169116 TAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGA 169175 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||| |||||||| || |||||||| |||||||| ||||| ||||| | Sbjct 169176 TCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAA 169235 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | || || || ||||| || |||||||||||||| |||||||| Sbjct 169236 GACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 >seq9 Length=202349 Score = 96.9 bits (106), Expect = 6e-15 Identities = 457/712 (64%), Gaps = 32/712 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| | || || ||| || ||||| ||||| ||||||||| Sbjct 51263 TATCGCCAAAGCATGTACTCGAGAGGAGTAGAGTCAAGATGGTTGTCAATGTGGTGGAAA 51322 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACA-GAGCCCCGAG- 225095 || |||||||| ||||| | ||| || ||| || |||||||| || || | || || Sbjct 51323 GCGTGCTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCACCAAGG 51382 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 |||||| | ||| || || |||| ||||| || |||| || || | ||| ||||| Sbjct 51383 TTCGGTTCGGTCTCACCAGTAAGGAGCTTGACAAGGGTAGATTTACCAGAACCGTTGGGA 51442 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGT-----TGCTGA 225206 |||| | ||| || ||||| | | ||||| ||| | ||| || || Sbjct 51443 CCAAGAATAGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGTTGTTG- 51501 Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266 ||| || |||| |||| || | ||| |||| ||| | | | | Sbjct 51502 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 51557 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACC-G 225323 |||| | | | ||| || || | || | ||| | || ||| | ||| | | Sbjct 51558 CCTTAGTCTTCACACCATCAAGAAGGGGAGGGTTGGGAAGCTTGAACTGGTAGTCCTCAG 51617 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCT--TTGCCACGAAAGCAGACAG 225381 || | | || | ||||||||| |||||| || | ||| ||||| | || Sbjct 51618 CGACATCGAGTTGGTAGTAAGACTTAGCCTCAGGAACGTGCTTG--ACGAATTCCTCAAG 51675 Query 225382 GTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACAC 225441 ||| ||| ||| | || | | ||||| ||| || || | | || | || || Sbjct 51676 GTTACCGGGGTACCTCTTCAACTTGAAGTTGTTAAGGTGAAGGAC----GTCGGTAACGG 51731 Query 225442 TGCG-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCC 225498 | || | ||||||| |||||||||| || ||||||||||| | ||| || || || Sbjct 51732 TTCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTGAGAGA 51789 Query 225499 CTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 |||| | |||| ||||| | ||||| || |||| |||||| ||||| ||||| Sbjct 51790 GGTGAGATAGTTGATAAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTC 51849 Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618 || | ||||| || || | | || ||||| || | |||| |||||||| ||||| Sbjct 51850 GAGCAAGAGGATATCGGCCTTGAAAAGAATGGCTCGGGCAAGAGCAAGCTTCATCTTCCA 51909 Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCG 225670 || || || || || || || || |||||| ||||||| || ||| Sbjct 51910 ACCACCAGAAAGAGAACCAATAGAGTTCTTCTGCTTAACTTCGTCGAAACCG 51961 >seq152 Length=36388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || ||||| || || || | |||||| |||||||| || | | || ||| Sbjct 23056 TAGTCAGAAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGG 23115 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||||||||| | Sbjct 23116 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 23175 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || | ||||||||| ||||| || || Sbjct 23176 GACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAG 23210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613425701880