Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq95 185 2e-41
seq6 147 4e-30
>seq95
Length=57217
Score = 185 bits (204), Expect = 2e-41
Identities = 469/710 (66%), Gaps = 10/710 (1%)
Strand=Plus/Minus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|| ||||| |||||||| ||||| || | | |||| | ||| || || |||||
Sbjct 51263 GCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCAGTACAGAGA 51204
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|||||| |||| ||||| || ||||||| || |||||||||| |||| ||| |||||
Sbjct 51203 TTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCGGCATCCTTA 51144
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|| ||| | || | || ||||| ||| || | |||| | ||| || | |
Sbjct 51143 TAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAACCAAAGCTTC 51084
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927
|| |||| || | | |||| |||| |||||||| ||| || |||
Sbjct 51083 TGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTCTCGTAAAGCTTCTCA 51024
Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987
|| || || | || ||| | || || || ||| || || ||||| || ||||
Sbjct 51023 AATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACATAAGGGTCCAG 50964
Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047
|| || || | ||| | || |||||| || ||||||||||||||||| | ||| ||
Sbjct 50963 TCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAAAGA 50904
Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107
|| | | | ||| ||| ||| ||||||||| | || | || ||||| ||
Sbjct 50903 TCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAATCAAATACA 50844
Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167
|| ||||||||||||| | |||| |||| ||| || || ||||||||||| || |||
Sbjct 50843 TCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCTTGG 50784
Query 245168 TCCACCATCCTCTCGAGC----GCGT-TGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222
| || | | |||||| |||| ||| | || || |||| | || |||||||
Sbjct 50783 T----CAACGTATCGAGCAGTGGCGTCATAAGCT-CGGAGCATAGGAATGATACCGTTAG 50729
Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282
||| |||||||| || ||||||| |||||| | | || ||| ||| | |
Sbjct 50728 AGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGAC 50669
Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342
| | || || ||| ||||||||| | || || |||||| || || || || |
Sbjct 50668 CAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCAT 50609
Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392
| ||| || ||||||| | |||||||| || |||| |||||||
Sbjct 50608 CAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGC 50559
>seq6
Length=242052
Score = 147 bits (162), Expect = 4e-30
Identities = 215/296 (73%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 42571 TCAACACGTACATCCTGGATCCCG-TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACG 42629
|| |||| |||||| ||| | | |||| || ||| || ||| | || ||||| ||
Sbjct 183561 TCGACACCTACATCAAGGACACTGCTCGA-CGAAACTTCCTTTTCGACGCTATGGACACC 183619
Query 42630 ATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGC 42688
|| || || ||| |||||||| |||||||| || |||||| || ||| |
Sbjct 183620 ATCCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACAAGCGAT-C 183678
Query 42689 AACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGC 42748
||||| ||| | || | || || | |||||||| || ||||||||||| || |
Sbjct 183679 TTGTTTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTC 183738
Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGA 42807
|||||||||||||||||||||||| || |||| || ||||| || ||||||||||| |
Sbjct 183739 TTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTC-ATGCCTGGTCTCACCTTCTCTA 183797
Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863
|||| |||||| | |||||||| || || | ||||||||||| ||||| |||
Sbjct 183798 ACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 183853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944330004497040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |