Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq95 185 2e-41 seq6 147 4e-30 >seq95 Length=57217 Score = 185 bits (204), Expect = 2e-41 Identities = 469/710 (66%), Gaps = 10/710 (1%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || ||||| |||||||| ||||| || | | |||| | ||| || || ||||| Sbjct 51263 GCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCAGTACAGAGA 51204 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 |||||| |||| ||||| || ||||||| || |||||||||| |||| ||| ||||| Sbjct 51203 TTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCGGCATCCTTA 51144 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||| | || | || ||||| ||| || | |||| | ||| || | | Sbjct 51143 TAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAACCAAAGCTTC 51084 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 || |||| || | | |||| |||| |||||||| ||| || ||| Sbjct 51083 TGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTCTCGTAAAGCTTCTCA 51024 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || || || | || ||| | || || || ||| || || ||||| || |||| Sbjct 51023 AATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACATAAGGGTCCAG 50964 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || || || | ||| | || |||||| || ||||||||||||||||| | ||| || Sbjct 50963 TCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAAAGA 50904 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | | | ||| ||| ||| ||||||||| | || | || ||||| || Sbjct 50903 TCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAATCAAATACA 50844 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||||||||||| | |||| |||| ||| || || ||||||||||| || ||| Sbjct 50843 TCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCTTGG 50784 Query 245168 TCCACCATCCTCTCGAGC----GCGT-TGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 | || | | |||||| |||| ||| | || || |||| | || ||||||| Sbjct 50783 T----CAACGTATCGAGCAGTGGCGTCATAAGCT-CGGAGCATAGGAATGATACCGTTAG 50729 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 ||| |||||||| || ||||||| |||||| | | || ||| ||| | | Sbjct 50728 AGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGAC 50669 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | || || ||| ||||||||| | || || |||||| || || || || | Sbjct 50668 CAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCAT 50609 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 | ||| || ||||||| | |||||||| || |||| ||||||| Sbjct 50608 CAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGC 50559 >seq6 Length=242052 Score = 147 bits (162), Expect = 4e-30 Identities = 215/296 (73%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 42571 TCAACACGTACATCCTGGATCCCG-TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACG 42629 || |||| |||||| ||| | | |||| || ||| || ||| | || ||||| || Sbjct 183561 TCGACACCTACATCAAGGACACTGCTCGA-CGAAACTTCCTTTTCGACGCTATGGACACC 183619 Query 42630 ATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGC 42688 || || || ||| |||||||| |||||||| || |||||| || ||| | Sbjct 183620 ATCCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACAAGCGAT-C 183678 Query 42689 AACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGC 42748 ||||| ||| | || | || || | |||||||| || ||||||||||| || | Sbjct 183679 TTGTTTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTC 183738 Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGA 42807 |||||||||||||||||||||||| || |||| || ||||| || ||||||||||| | Sbjct 183739 TTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTC-ATGCCTGGTCTCACCTTCTCTA 183797 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||| |||||| | |||||||| || || | ||||||||||| ||||| ||| Sbjct 183798 ACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 183853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330004497040