Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 4e-21
>seq6
Length=242052
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||| | || || || ||||| |||||||| || | | || || ||||||||
Sbjct 169311 ACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTCA 169370
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| ||||| ||||| |||| | ||||||||||| |||||||| ||||| || || ||
Sbjct 169371 AGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGA 169430
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
|| || ||| ||| || | || ||| || || || || | ||| | ||| |||
Sbjct 169431 ATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTTG 169490
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| | ||| || |||||||| |||||
Sbjct 169491 CCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 100 bits (110), Expect = 3e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || || ||||||||||||||||| || | | ||| || | ||
Sbjct 168511 AGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCC 168570
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||| |||||| ||||||| || ||||| ||||| || || ||||| || |||
Sbjct 168571 TCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTCT 168630
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | |||||| | | || || || | ||| | |||
Sbjct 168631 TGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGACCTCAAGAGTAATTGTC 168690
Query 64412 TTGCCGGT 64419
|| || ||
Sbjct 168691 TTACCCGT 168698
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| || || || || || ||||||||||| | | || || | ||
Sbjct 168798 AGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCC 168857
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||| || || || ||| | || | || ||||| || ||||| || || || || ||
Sbjct 168858 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCC 168917
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || ||| || || ||||| | ||| | |||
Sbjct 168918 TGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTT 168977
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| | ||| || |||||||| |||||
Sbjct 168978 TTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499639934708760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |