Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 >seq6 Length=242052 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||||| || | ||| | | | ||||||||||| |||||||||||| Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || ||||| || |||| | |||| ||||| ||||| ||||| Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || |||| || | |||||| | ||||| | Sbjct 169413 ATACCTTCCTTGTC-CTGAATCTTCGCCTTGACATTG-TCGATGGTGTCAGAGGACTCAA 169470 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || || ||||| || || ||||||||||| Sbjct 169471 CCTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||| ||| | |||||| ||||| ||||||||||| | Sbjct 168814 TTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAG 168873 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536 | |||| | || || || || ||||| ||||| || ||||| ||| | || | || Sbjct 168874 CAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTC-CTGAATCTTCGCCTTG 168932 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||||| | ||||| || || | || | ||||| || || ||||| Sbjct 168933 ACATTG-TCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGT 168991 Query 138597 TTTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 168992 CTTGACGAAAATCTGCAT 169009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || ||||| | | |||| | ||||| ||||| ||||| ||||| || ||| Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| || || | ||||| | | |||||||| |||||||| |||| || | Sbjct 169704 TCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCACTTCGAGAGTGAT 169762 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 || ||||| || || || || || ||||||||||||| Sbjct 169763 AGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATGG 169800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257567644880