Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 2e-25
seq152 82.4 7e-11
>seq6
Length=242052
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | || ||| ||| || || ||||| |||
Sbjct 168813 GTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 168872
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||||||| |||||||| ||||| || |||||||||||| || ||| ||||
Sbjct 168873 GCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 168932
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | ||||||||| | || | ||||||||||| |||||
Sbjct 168933 ACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGTC 168992
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 168993 TTGACGAAAATCTGCAT 169009
Score = 114 bits (126), Expect = 1e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || ||||| |||||||||||||||| || ||||| || ||||||||
Sbjct 169643 ATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTT 169702
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| |||||| | | ||| ||||||| || |
Sbjct 169703 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTGAT 169762
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|| || ||||| || || || || |||||||||||||
Sbjct 169763 AGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATGG 169800
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | || ||||| ||||| || ||||| |||
Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || || || ||||| ||| | || ||||||||||| || |||||
Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || ||||||||| || ||| ||||| | |||| |||||| | ||| ||
Sbjct 169413 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 169472
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||||||||| ||||| || || |||||||||||
Sbjct 169473 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995
||||||| || || ||| ||| || | ||| ||||| || |||||||||| ||||
Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 169173
Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG 127055
|||| ||||| || || ||||| ||| || || ||||| | |||| ||||| |
Sbjct 169174 GATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAG 169233
Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| |||||| || | || | || || ||||| || || || || |||||||||||
Sbjct 169234 AAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291
>seq152
Length=36388
Score = 82.4 bits (90), Expect = 7e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| ||||| ||| ||||||| |||||||| || || || || |||||||||
Sbjct 23077 TCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATACCCTCCTTG 23136
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | |||| |||||| | |||||| || | ||| |
Sbjct 23137 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 23196
Query 127079 GTTTTGCCGGTCAGA 127093
|| || ||||| |||
Sbjct 23197 GTCTTTCCGGTAAGA 23211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475496169810960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |