Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 8e-23
>seq6
Length=242052
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || ||||| || || || ||||||||||| || || |||
Sbjct 169290 ATACCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 169349
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | ||| ||||| ||| | || ||||| |||||||| ||
Sbjct 169350 GAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGA 169409
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| || || ||||| || |||| || | |||||| || |||||
Sbjct 169410 GGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCA 169469
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | ||||||||||| ||||| || || ||||| |||||
Sbjct 169470 ACCTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || || || || ||||| ||||| ||||| || ||||||
Sbjct 168780 ATACCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCG 168839
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | |||||| || || | |||||||||||||| || ||
Sbjct 168840 GAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGA 168899
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || ||||| || |||| || | ||||| || ||||||
Sbjct 168900 GGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCG 168959
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | ||||||||||| ||||| || || ||||| |||||
Sbjct 168960 ACTTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| ||||| || ||||| || | |||||||||||||| || || ||||| ||||| ||
Sbjct 169136 ATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGATCAGGAGGAATACCTTCCTT 169195
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
||| ||||| || |||| || | ||||| ||||||||||| || |||||||
Sbjct 169196 ATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAAGACTCGACCTCAAGAGTAAT 169255
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || || || || ||||| |||||
Sbjct 169256 AGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||||||| |||||||| || || || || || || || || || || ||||
Sbjct 169668 ATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG 169727
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||||||||||||||| ||||||||||| | || || ||||| || || || ||
Sbjct 169728 TCGATGGTGTCGGAAGACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACG 169787
Query 45330 AAAATTTGCAT 45340
||||| |||||
Sbjct 169788 AAAATCTGCAT 169798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451998798618840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |