Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq95 181 1e-40
seq6 113 6e-20
seq21 87.8 2e-12
>seq95
Length=57217
Score = 181 bits (200), Expect = 1e-40
Identities = 721/1123 (64%), Gaps = 39/1123 (3%)
Strand=Plus/Minus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
||||||| ||| |||| |||||||||| || || || || || | | |||||| |
Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581
Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182
|||| |||| || | ||| | ||||| || || ||||| || || ||||| |
Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521
Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239
| || | ||| | || ||||||| || || |||| | || || ||
Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCA--- 51464
Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299
| || | || ||||||||||||||||| ||||||| || ||||| | ||| || || |
Sbjct 51463 TGAAAGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGT 51404
Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356
| || || ||| ||| ||||| | || | || || | | || || ||||
Sbjct 51403 TGCG---GGCCTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGG 51347
Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416
|||||||| || || ||||| ||||| | | | || | |||| || || |
Sbjct 51346 CAACAACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATCCA 51287
Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476
| | |||||| || | || || || ||||| || | |||||| | || |
Sbjct 51286 CGAAGGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAAT 51227
Query 116477 ACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||| |||||||| ||||| | ||| || | ||||||||| || | || |||||| ||
Sbjct 51226 ACTCCATAATTTCAGTACAGAGATTACTGGA--CTTAATGGTACCAAGGTGCTTTTGGTT 51169
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
||||| | ||| |||||||| || || || || || ||||| || || |
Sbjct 51168 GGACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGC 51109
Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC----CCC 116649
|| || ||||| ||| | | || | |||| | ||| || ||| | |||
Sbjct 51108 CTCAAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGT----TTTTCTCCCCTTACCC 51054
Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCT 116709
| | |||||| | ||| || |||||| ||||| || | || | |||||
Sbjct 51053 TGCCTCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCA 50994
Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769
|| || | | ||||| | || | ||| | ||| | || || |||||||||||
Sbjct 50993 GGACACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAA 50934
Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829
|| || ||||||||||| || |||| ||||| ||| || | || || | || ||
Sbjct 50933 AGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGG 50874
Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889
|| | || || | || || | | ||| |||||||| || || || || | |||
Sbjct 50873 TTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCG 50814
Query 116890 ATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAAT 116943
| | || | |||| ||| | |||| || || | || || |||| | |
Sbjct 50813 AAGGCACCAGGACGCTTG---TTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAA 50757
Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACT 117001
| || ||||| ||||||||||| | ||| | || || || || || || ||| |
Sbjct 50756 GCTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC- 50698
Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061
|| || | || || ||| ||||| | ||||||||| || || ||| ||||| || |
Sbjct 50697 -CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAG 50639
Query 117062 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 117121
| || | ||||| | ||||||| ||||| || || ||| |||| | || | ||| |
Sbjct 50638 CACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAA 50579
Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164
|||| ||||| || |||| || ||||| || ||||| ||
Sbjct 50578 AGCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq6
Length=242052
Score = 113 bits (124), Expect = 6e-20
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || |||||||||||||||||| |||||||| || || |||||| |||||
Sbjct 183840 GCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCA 183781
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | |||||| || | || || ||||||||||||||
Sbjct 183780 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGATA 183721
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTC 127671
|| || || ||||| || | || |||||
Sbjct 183720 CCTTCGACGGCAGCGAAAGCGATGAGTCGCTC 183689
>seq21
Length=50189
Score = 87.8 bits (96), Expect = 2e-12
Identities = 283/429 (66%), Gaps = 8/429 (2%)
Strand=Plus/Minus
Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806
||| || || ||||| || | || || | | ||||| |||| |||||||| | |
Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869
Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
|||||||||||| | || || || ||| | || |||||||||| ||| || |
Sbjct 7868 GTCTGGTTCAATGCTCA-TACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAG 7810
Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924
| | ||||| | | ||||| ||| || ||||||||||| || | | ||
Sbjct 7809 GGTGGAAGATCGCTCTCGTCATCCGTGG-AAGATTTGTGAAGATATAACGAGCAGAAGCA 7751
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| ||||| ||||| || || || ||||| ||||| || || | |||||||||
Sbjct 7750 GCGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATA 7691
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCG-CGAGGGAGACTTC 176043
||||| ||| | | ||| | || || || || ||| || | | || ||||
Sbjct 7690 TTGTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAG-CTTC 7632
Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCT 176102
||| ||||| || || | ||| |||| || || ||| ||| ||| || ||||| || |
Sbjct 7631 ACCATGATGATATGCAGTCTTCTCCGAAACGTA-ACCGACAAGCTGAGCGACCTTAATTT 7573
Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162
| | |||| || | ||| || || | | ||||||| ||| ||| ||||| |
Sbjct 7572 CCTTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGAC 7513
Query 176163 CGTCGGCCA 176171
|||||||||
Sbjct 7512 CGTCGGCCA 7504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613501225973640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |