Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq95 181 1e-40 seq6 113 6e-20 seq21 87.8 2e-12 >seq95 Length=57217 Score = 181 bits (200), Expect = 1e-40 Identities = 721/1123 (64%), Gaps = 39/1123 (3%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| ||| |||| |||||||||| || || || || || | | |||||| | Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 |||| |||| || | ||| | ||||| || || ||||| || || ||||| | Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAAA 116239 | || | ||| | || ||||||| || || |||| | || || || Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCA--- 51464 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || | || ||||||||||||||||| ||||||| || ||||| | ||| || || | Sbjct 51463 TGAAAGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGT 51404 Query 116300 TTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 | || || ||| ||| ||||| | || | || || | | || || |||| Sbjct 51403 TGCG---GGCCTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGG 51347 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416 |||||||| || || ||||| ||||| | | | || | |||| || || | Sbjct 51346 CAACAACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATCCA 51287 Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476 | | |||||| || | || || || ||||| || | |||||| | || | Sbjct 51286 CGAAGGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAAT 51227 Query 116477 ACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||| |||||||| ||||| | ||| || | ||||||||| || | || |||||| || Sbjct 51226 ACTCCATAATTTCAGTACAGAGATTACTGGA--CTTAATGGTACCAAGGTGCTTTTGGTT 51169 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| | ||| |||||||| || || || || || ||||| || || | Sbjct 51168 GGACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGC 51109 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC----CCC 116649 || || ||||| ||| | | || | |||| | ||| || ||| | ||| Sbjct 51108 CTCAAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGT----TTTTCTCCCCTTACCC 51054 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCT 116709 | | |||||| | ||| || |||||| ||||| || | || | ||||| Sbjct 51053 TGCCTCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCA 50994 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 || || | | ||||| | || | ||| | ||| | || || ||||||||||| Sbjct 50993 GGACACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAA 50934 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 || || ||||||||||| || |||| ||||| ||| || | || || | || || Sbjct 50933 AGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGG 50874 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || | || || | || || | | ||| |||||||| || || || || | ||| Sbjct 50873 TTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCG 50814 Query 116890 ATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAAT 116943 | | || | |||| ||| | |||| || || | || || |||| | | Sbjct 50813 AAGGCACCAGGACGCTTG---TTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAA 50757 Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACT 117001 | || ||||| ||||||||||| | ||| | || || || || || || ||| | Sbjct 50756 GCTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC- 50698 Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061 || || | || || ||| ||||| | ||||||||| || || ||| ||||| || | Sbjct 50697 -CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAG 50639 Query 117062 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 117121 | || | ||||| | ||||||| ||||| || || ||| |||| | || | ||| | Sbjct 50638 CACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAA 50579 Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 |||| ||||| || |||| || ||||| || ||||| || Sbjct 50578 AGCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 >seq6 Length=242052 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||||||||| |||||||| || || |||||| ||||| Sbjct 183840 GCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCA 183781 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || || |||||||||||||| Sbjct 183780 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGATA 183721 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTC 127671 || || || ||||| || | || ||||| Sbjct 183720 CCTTCGACGGCAGCGAAAGCGATGAGTCGCTC 183689 >seq21 Length=50189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 283/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806 ||| || || ||||| || | || || | | ||||| |||| |||||||| | | Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869 Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 |||||||||||| | || || || ||| | || |||||||||| ||| || | Sbjct 7868 GTCTGGTTCAATGCTCA-TACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAG 7810 Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 | | ||||| | | ||||| ||| || ||||||||||| || | | || Sbjct 7809 GGTGGAAGATCGCTCTCGTCATCCGTGG-AAGATTTGTGAAGATATAACGAGCAGAAGCA 7751 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || ||||| ||||| || || || ||||| ||||| || || | ||||||||| Sbjct 7750 GCGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATA 7691 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCG-CGAGGGAGACTTC 176043 ||||| ||| | | ||| | || || || || ||| || | | || |||| Sbjct 7690 TTGTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAG-CTTC 7632 Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCT 176102 ||| ||||| || || | ||| |||| || || ||| ||| ||| || ||||| || | Sbjct 7631 ACCATGATGATATGCAGTCTTCTCCGAAACGTA-ACCGACAAGCTGAGCGACCTTAATTT 7573 Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162 | | |||| || | ||| || || | | ||||||| ||| ||| ||||| | Sbjct 7572 CCTTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGAC 7513 Query 176163 CGTCGGCCA 176171 ||||||||| Sbjct 7512 CGTCGGCCA 7504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501225973640