Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 129 1e-24 >seq6 Length=242052 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| || ||||| || ||||||||||||| ||||||||| | | ||| Sbjct 169298 TCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 169357 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| || |||||||||||||| || | ||||||||||| ||| ||| || Sbjct 169358 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACC 169417 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||||||||| ||| || |||| |||||| | | || || || | Sbjct 169418 TTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAG 169477 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| || || ||||| || Sbjct 169478 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTG 169516 Score = 95.1 bits (104), Expect = 3e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| | | |||||| |||||||| |||||||| || || ||||| | ||||||| Sbjct 169621 TGTAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCT 169680 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||| || || || ||||| ||||| ||| || |||| |||||| | Sbjct 169681 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 169740 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || | ||||| |||||||| ||||| || || || ||||| || Sbjct 169741 AAGACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTG 169795 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| |||||||| |||| |||||| || | | ||| | ||||| Sbjct 168798 AGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCC 168857 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || ||||| | || ||||| || ||| || || || ||| Sbjct 168858 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCC 168917 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | | || || || | ||||| || Sbjct 168918 TGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTT 168977 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| || Sbjct 168978 TTGCCGGTAAGAGTCTTGACGAAAATCTG 169006 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 |||| |||| |||||| | |||||||||| |||||||||||| ||||| | || |||| Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 169173 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 | || ||| ||| ||||| ||||||||||| ||| || |||| ||||| | Sbjct 169174 GATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAG 169233 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || | || || ||||| || || || || || || ||||| || Sbjct 169234 AAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTG 169288 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||| ||||| ||||| | ||||||||| | | || | ||||| Sbjct 168511 AGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCC 168570 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||| || ||||| || ||||| || || || ||||| || Sbjct 168571 TCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTCT 168630 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| || || | | ||| || || | || || ||| Sbjct 168631 TGGATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGACCTCAAGAGTAATTGTC 168690 Query 199598 TTACCCGTGAGA 199609 |||||||| ||| Sbjct 168691 TTACCCGTAAGA 168702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178909833257193