Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq163 104 2e-16 seq21 89.7 4e-12 >seq163 Length=95501 Score = 104 bits (114), Expect = 2e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 668846 AGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATG 668905 || |||| ||| |||||||||||||| ||||| |||||||||||||| ||||||||| | Sbjct 87075 AGGTTAAAAGGAAAAGAAGGTCGTATGAGAGGTAATTTGATGGGAAAGCGTGTCGATTTT 87134 Query 668906 TCTGCACGTACAGTTATTACTTCTGATCCCAA 668937 || || || || ||||||||| ||||||||| Sbjct 87135 TCAGCGCGAACGGTTATTACTGGTGATCCCAA 87166 >seq21 Length=50189 Score = 89.7 bits (98), Expect = 4e-12 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || || || || ||| |||| || |||||||| || ||| | ||||| | || || ||| Sbjct 6648 AACTGCACTCTCATTCTGACGGAAGGAGATTCTGCCAAAGCTCTCGCTGTTTCCGGCCTT 6707 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | ||| | ||| | ||||| |||||||| || ||||| |||||| | || ||| Sbjct 6708 GCAGTTGTCGGACGCGATGAATATGGCGTTTTCCCTCTCAGAGGTAAACTTCTCAACGTT 6767 Query 635558 AGGGATGCTAGTCCTaaaaaaaTTGCTGATAATGAGGAAATTACAGCA-ATCaaaaaaaT 635616 | || ||| ||| | | |||| | |||||||||| | ||||| ||||| | || Sbjct 6768 CGCGAAGCTGGTCACGACCAGATTGTAAAAAATGAGGAAA-TCCAGCATATCAAGCAGAT 6826 Query 635617 TGTTGGACTTGAA 635629 | |||| ||||| Sbjct 6827 T-TTGGGTTTGAA 6838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780783743453974