Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq95 131 2e-25
seq385 118 1e-21
seq666 95.1 2e-14
seq652 95.1 2e-14
seq305 93.3 5e-14
>seq95
Length=57217
Score = 131 bits (144), Expect = 2e-25
Identities = 449/696 (65%), Gaps = 13/696 (2%)
Strand=Plus/Minus
Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343
|||||| |||||| ||||| | ||| || ||||| ||||||| ||| || ||||| |
Sbjct 51226 ACTCCATAATTTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGG 51167
Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403
|||| || || || || ||| || || ||| || || || | || | |
Sbjct 51166 ACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCT 51107
Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATT 105463
|| || || ||||| || | ||| | | ||| | | |||| | |
Sbjct 51106 CAAGGATAGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCT 51047
Query 105464 CGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCT 105523
|||| |||||||||| | ||||| |||| ||||| ||||| | ||| || ||
Sbjct 51046 CGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACT 50987
Query 105524 GATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTG 105583
| | ||||| | | | ||| | ||||||||||| || || |||||||| | ||| |
Sbjct 50986 CAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 50927
Query 105584 GAATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAA 105641
| ||||| | ||| | || || || || | |||| |||| || | ||| || |||
Sbjct 50926 GGATCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTT 50869
Query 105642 ACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGA 105701
| | || | ||||| | | ||| |||||||| || || | ||||| || | ||
Sbjct 50868 CCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGA-AGG 50810
Query 105702 CCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCG 105755
| | | ||||| || |||| | || |||| || || | || ||| ||||
Sbjct 50809 CAC--CAGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCG 50752
Query 105756 TAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGC 105815
| ||| ||||| ||||| | || || || || || ||| | || || ||
Sbjct 50751 GAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGC 50692
Query 105816 ACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTC 105875
||| | || ||||| ||| | |||||||| ||||| ||| ||| | |||||
Sbjct 50691 ACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGT 50632
Query 105876 TTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGA 105935
|| | |||||||| ||||| || || ||| ||||| | || | || || || ||
Sbjct 50631 CTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGA 50572
Query 105936 TGACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
|||||| || || | ||| ||||| |||||||| ||
Sbjct 50571 TGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq385
Length=29769
Score = 118 bits (130), Expect = 1e-21
Identities = 314/478 (66%), Gaps = 4/478 (1%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||| || || |||||||| ||| | | |||| || || | ||| | || ||
Sbjct 16258 TCCTCGAATCGGGCACGGGTGATGTTGGAAGAGAAGTCGGTACCCTGGTAGAGAGAGTCG 16317
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366
| || | ||| || || | ||||| | |||||||| || |||||||| || |
Sbjct 16318 ACCTCGACGGTGGTCTGAGTAACGGAAGAAAGAGTTCGCTTAGCACGCTCACAAGCAGAC 16377
Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426
| || || || | ||||| | | | || || || ||| || | || |||
Sbjct 16378 CTCAATCGTCGCAAAGCACGAGCATCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAAC 16437
Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486
|| | |||||| |||||| | ||||| || |||||||| | ||| || ||
Sbjct 16438 TCAGCCTTGAAGTGCTCAAGGAGGTTGTTGTCGAAGTCCTCACCACCAAGGTGAGTGTCA 16497
Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCT--CCTTCAATGTTTAACAACGAAACATCAA 7544
|| ||||| || ||||| |||| ||| || | |||| | | | || ||||| |
Sbjct 16498 CCAGCGGTGGCCTTGACAGAGAAGA--CCTTACCCTGAATGCTAAGGAGGGAGACATCGA 16555
Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604
| ||||||||||||| ||| || ||||| ||||| || || || | |||| || |
Sbjct 16556 AAGTACCACCACCCAAGTCGAAGATGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAA 16615
Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664
||||||| || ||||| || || || || || || || ||||| || | || ||||
Sbjct 16616 GACCGTAGGCAATAGCGGCAGCGGTAGGCTCGTTGATGATACGGAGGACCTCAAGACCAG 16675
Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|||| | | || || || || || | || || || ||||| |||||||| || ||
Sbjct 16676 CAATGGCACCGGCGTCCTTGGTAGCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 16733
>seq666
Length=415
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | || || || || ||||| || || || || ||||||||
Sbjct 155 TCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCGGTAGCCTTAACCTCGAAGATACCC 96
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | || | || ||||| || ||||||||||| ||||| || || | |||
Sbjct 95 TCCTCAATGGTCAAGAGAGACACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 36
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTA 7611
||| | || | || | ||||| || ||||||||
Sbjct 35 TTCTTCTCACCCTCAGTCTTCTTGTCAAGACCGTA 1
>seq652
Length=410
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| ||||||||||| | || || || || ||||| || || || || ||||||||
Sbjct 155 TCGAAGTCTTCACCACCAAGATGAGTGTCACCAGCGGTAGCCTTAACCTCGAAGATACCC 96
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | || | || ||||| || ||||||||||| ||||| || || | |||
Sbjct 95 TCCTCAATGGTCAAGAGGGACACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 36
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTA 7611
||| | || | | | ||||| || ||||||||
Sbjct 35 TTCTTCTCACCCCCAGTCTTCTTGTCAAGACCGTA 1
>seq305
Length=7100
Score = 93.3 bits (102), Expect = 5e-14
Identities = 139/197 (71%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939
|||||| | | ||||| ||||| ||| | || || | || | |||||| | ||
Sbjct 6830 ACCTTAAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGGCAAACTTGCGGCCA 6771
Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999
|| | ||||| ||||| ||||||||||| | || ||||| || ||| ||||||||
Sbjct 6770 ATCAACCGCTTAGCATCGAAAACTGTGTTGTAAGGATTCATTGCAACTTGATTCTTCGCG 6711
Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059
|| || || || || ||||| | || | ||||| ||||| ||||| || ||||||
Sbjct 6710 GCATCACCAATGAGTCGTTC---AGAGTCATTGAACGCAACGTATGATGGTGTTGTTCGA 6654
Query 8060 TTCCCTTGGTCGTTCGC 8076
|| || || ||||| ||
Sbjct 6653 TTGCCCTGATCGTTGGC 6637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635126615394360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |