Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq95 131 2e-25 seq385 118 1e-21 seq666 95.1 2e-14 seq652 95.1 2e-14 seq305 93.3 5e-14 >seq95 Length=57217 Score = 131 bits (144), Expect = 2e-25 Identities = 449/696 (65%), Gaps = 13/696 (2%) Strand=Plus/Minus Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 |||||| |||||| ||||| | ||| || ||||| ||||||| ||| || ||||| | Sbjct 51226 ACTCCATAATTTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGG 51167 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 |||| || || || || ||| || || ||| || || || | || | | Sbjct 51166 ACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCT 51107 Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATT 105463 || || || ||||| || | ||| | | ||| | | |||| | | Sbjct 51106 CAAGGATAGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCT 51047 Query 105464 CGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCT 105523 |||| |||||||||| | ||||| |||| ||||| ||||| | ||| || || Sbjct 51046 CGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACT 50987 Query 105524 GATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTG 105583 | | ||||| | | | ||| | ||||||||||| || || |||||||| | ||| | Sbjct 50986 CAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 50927 Query 105584 GAATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAA 105641 | ||||| | ||| | || || || || | |||| |||| || | ||| || ||| Sbjct 50926 GGATCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTT 50869 Query 105642 ACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGA 105701 | | || | ||||| | | ||| |||||||| || || | ||||| || | || Sbjct 50868 CCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGA-AGG 50810 Query 105702 CCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCG 105755 | | | ||||| || |||| | || |||| || || | || ||| |||| Sbjct 50809 CAC--CAGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCG 50752 Query 105756 TAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGC 105815 | ||| ||||| ||||| | || || || || || ||| | || || || Sbjct 50751 GAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGC 50692 Query 105816 ACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTC 105875 ||| | || ||||| ||| | |||||||| ||||| ||| ||| | ||||| Sbjct 50691 ACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGT 50632 Query 105876 TTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGA 105935 || | |||||||| ||||| || || ||| ||||| | || | || || || || Sbjct 50631 CTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGA 50572 Query 105936 TGACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 |||||| || || | ||| ||||| |||||||| || Sbjct 50571 TGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 >seq385 Length=29769 Score = 118 bits (130), Expect = 1e-21 Identities = 314/478 (66%), Gaps = 4/478 (1%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || |||||||| ||| | | |||| || || | ||| | || || Sbjct 16258 TCCTCGAATCGGGCACGGGTGATGTTGGAAGAGAAGTCGGTACCCTGGTAGAGAGAGTCG 16317 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||||| | |||||||| || |||||||| || | Sbjct 16318 ACCTCGACGGTGGTCTGAGTAACGGAAGAAAGAGTTCGCTTAGCACGCTCACAAGCAGAC 16377 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 | || || || | ||||| | | | || || || ||| || | || ||| Sbjct 16378 CTCAATCGTCGCAAAGCACGAGCATCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAAC 16437 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| | ||||| || |||||||| | ||| || || Sbjct 16438 TCAGCCTTGAAGTGCTCAAGGAGGTTGTTGTCGAAGTCCTCACCACCAAGGTGAGTGTCA 16497 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCT--CCTTCAATGTTTAACAACGAAACATCAA 7544 || ||||| || ||||| |||| ||| || | |||| | | | || ||||| | Sbjct 16498 CCAGCGGTGGCCTTGACAGAGAAGA--CCTTACCCTGAATGCTAAGGAGGGAGACATCGA 16555 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604 | ||||||||||||| ||| || ||||| ||||| || || || | |||| || | Sbjct 16556 AAGTACCACCACCCAAGTCGAAGATGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAA 16615 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 ||||||| || ||||| || || || || || || || ||||| || | || |||| Sbjct 16616 GACCGTAGGCAATAGCGGCAGCGGTAGGCTCGTTGATGATACGGAGGACCTCAAGACCAG 16675 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||| | | || || || || || | || || || ||||| |||||||| || || Sbjct 16676 CAATGGCACCGGCGTCCTTGGTAGCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 16733 >seq666 Length=415 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | || || || || ||||| || || || || |||||||| Sbjct 155 TCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCGGTAGCCTTAACCTCGAAGATACCC 96 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 95 TCCTCAATGGTCAAGAGAGACACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 36 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTA 7611 ||| | || | || | ||||| || |||||||| Sbjct 35 TTCTTCTCACCCTCAGTCTTCTTGTCAAGACCGTA 1 >seq652 Length=410 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||| | || || || || ||||| || || || || |||||||| Sbjct 155 TCGAAGTCTTCACCACCAAGATGAGTGTCACCAGCGGTAGCCTTAACCTCGAAGATACCC 96 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 95 TCCTCAATGGTCAAGAGGGACACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 36 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTA 7611 ||| | || | | | ||||| || |||||||| Sbjct 35 TTCTTCTCACCCCCAGTCTTCTTGTCAAGACCGTA 1 >seq305 Length=7100 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 |||||| | | ||||| ||||| ||| | || || | || | |||||| | || Sbjct 6830 ACCTTAAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGGCAAACTTGCGGCCA 6771 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || | ||||| ||||| ||||||||||| | || ||||| || ||| |||||||| Sbjct 6770 ATCAACCGCTTAGCATCGAAAACTGTGTTGTAAGGATTCATTGCAACTTGATTCTTCGCG 6711 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059 || || || || || ||||| | || | ||||| ||||| ||||| || |||||| Sbjct 6710 GCATCACCAATGAGTCGTTC---AGAGTCATTGAACGCAACGTATGATGGTGTTGTTCGA 6654 Query 8060 TTCCCTTGGTCGTTCGC 8076 || || || ||||| || Sbjct 6653 TTGCCCTGATCGTTGGC 6637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126615394360