Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq95 154 2e-32 seq6 154 2e-32 seq21 89.7 6e-13 >seq95 Length=57217 Score = 154 bits (170), Expect = 2e-32 Identities = 288/421 (68%), Gaps = 13/421 (3%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || ||||| || ||||| || | ||||| ||||| || || || | || | ||| Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || ||||| || |||| || |||| ||||||| ||||| || ||||| ||| Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 ||||||||||| || | ||||| || || || | || || | ||| || || | Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 50713 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| || ||| | || | ||||| ||||| ||||| || | | | ||||||| || | Sbjct 50714 GTACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTC 50773 Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | || || |||||| ||| ||||| || | |||| |||||||||||| Sbjct 50774 GATACGTTGACCAAGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGC 50830 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 50831 CCTGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 50890 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || || ||||| |||| ||| |||||||| || ||||| ||||||||| | || | Sbjct 50891 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCG 50950 Query 112138 A 112138 | Sbjct 50951 A 50951 >seq6 Length=242052 Score = 154 bits (170), Expect = 2e-32 Identities = 126/153 (82%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 |||||||||| |||| || || || || |||||||||||||||||||| ||| | | Sbjct 183688 TGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTC 183747 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | |||||||||||||||||||||||||| |||||| |||||| |||||||| || Sbjct 183748 CATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCAT 183807 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||||||| |||||| || ||||| Sbjct 183808 CTCTCGTGACGAGGGTCTCCACACCGACTTTGC 183840 >seq21 Length=50189 Score = 89.7 bits (98), Expect = 6e-13 Identities = 279/427 (65%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899 ||| ||||||||||| |||| ||| || | | ||||| || | ||||||||| | | Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869 Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959 |||||| |||||| ||| || || | || |||||||| | | || ||| || Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809 Query 175960 ATCAAAGATCTTTC-GGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 | |||||| || | |||| || || ||||| |||||||| | | || | Sbjct 7808 GTGGAAGATCGCTCTCGTCATC-CGTGGAAGATTTGTGAAGATATAACGAGCAGAAGCAG 7750 Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078 | || |||||||| || || |||||||||||||| || || | |||||||||| Sbjct 7749 CGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATAT 7690 Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138 |||| || | ||| | || || || || || || | | |||||| Sbjct 7689 TGTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAGCTTCAC 7630 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197 | || || || ||| ||||||| | || | ||| ||| ||| || || || || || Sbjct 7629 CATGATGATATGCAGTCTTCTCCGAAACGTA-ACCGACAAGCTGAGCGACCTTAATTTCC 7571 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | ||||||| | |||||| | | | |||||| || || ||| |||||||| Sbjct 7570 TTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 7511 Query 176258 TCCGCCA 176264 || |||| Sbjct 7510 TCGGCCA 7504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736355520880