Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq95 183 4e-41
seq6 107 2e-18
seq21 98.7 1e-15
>seq95
Length=57217
Score = 183 bits (202), Expect = 4e-41
Identities = 717/1115 (64%), Gaps = 23/1115 (2%)
Strand=Plus/Minus
Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978
||||||| || ||||| | ||| | || | ||||| || | | || ||| || |
Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581
Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038
|||| |||| || | |||| |||||||||| || ||||| || || || ||||| |
Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521
Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098
| || || ||| | | | ||| | ||||||| || | | | || |
Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGA 51461
Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158
| | || || ||||| || ||||| || |||| || ||||| |||||| ||| |
Sbjct 51460 AAGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGTTGC 51401
Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218
| || || || || |||| ||| ||||| | ||| ||||| | |||
Sbjct 51400 GGGCCTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGGCAACAA 51341
Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATA 110276
||| || || ||||| || || | | | ||| | || ||| || || || |
Sbjct 51340 CCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGA-CGT-TCAAGATCCACGAA 51283
Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336
|| ||||||| ||| || || || || || | | ||| || | || ||
Sbjct 51282 GGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTC 51223
Query 110337 CAAAATTTCCGTACACAAGTTGGAACT---CTTAATGACACCCAAGTTCTTCTGATTCGA 110393
|| |||||| ||||| | || ||| ||||||| ||| | || ||| || || ||
Sbjct 51222 CATAATTTCAGTACAGAGATT---ACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGA 51166
Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453
||||||||| ||||||||||| ||||| ||| |||||| || ||||| | ||
Sbjct 51165 CTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTC 51106
Query 110454 GAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCT 110512
|| || || ||| | | || | ||| || |||| | | ||| | | ||
Sbjct 51105 AAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCT 51047
Query 110513 CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT 110572
|||| | ||| | | ||||||||| | |||||| || || | ||| || ||
Sbjct 51046 CGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACT 50987
Query 110573 TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632
||||||| | |||| ||| | ||| | || || | ||||||||| || || |
Sbjct 50986 CAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 50927
Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692
| ||||| | || ||||||| ||||| || |||| || | ||| ||||| |
Sbjct 50926 GGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 50867
Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752
|| || | || || | | ||| | |||||| || || ||||||| |||| || |
Sbjct 50866 TTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCAC 50807
Query 110753 CCTTACGACGAC-----CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806
| | |||| || ||| ||| ||| || || || ||||| | | | | ||
Sbjct 50806 C---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGA 50750
Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866
|||||||||| || || | || | ||| || ||||| ||| ||| || ||||
Sbjct 50749 GCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCAC 50690
Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCT 110925
| || | ||| || || | |||||||||||| || ||| || || ||||| |||
Sbjct 50689 GGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCT 50630
Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985
|||| ||| | || ||||||||||| ||||| |||| |||| | |||||||| ||
Sbjct 50629 -TGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGAT 50571
Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020
|||||||| || || || || || |||||||| ||
Sbjct 50570 GACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq6
Length=242052
Score = 107 bits (118), Expect = 2e-18
Identities = 209/304 (69%), Gaps = 11/304 (4%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| ||| |||| || ||
Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| ||||| ||||||||
Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGC---AAAAGGTCGAGACTTGTC--- 119668
|| || || |||||||||| || |||||| | | ||| ||| ||||||
Sbjct 183721 ACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCG---CTTGTCAGA 183665
Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727
|| ||| |||||||||| |||||| | || || || |||| || | || || |
Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGGATGGTGTCCATAGCGT 183606
Query 119728 CGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGG 119787
||||||| || | |||| ||||| || || | || || || ||||||||
Sbjct 183605 CGAAAAGGAAGTTTCGTCGAGCAGTGTCCTTGATGTAGGTGTCGATAAGGAGAGAGTAGG 183546
Query 119788 TCTC 119791
||||
Sbjct 183545 TCTC 183542
>seq21
Length=50189
Score = 98.7 bits (108), Expect = 1e-15
Identities = 293/445 (66%), Gaps = 8/445 (2%)
Strand=Plus/Minus
Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417
||| ||||| ||||| || | ||| || | ||| |||||||| | ||||||||| || |
Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869
Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477
||| ||||||||| ||| || || | ||||||||||| | | || ||| ||
Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809
Query 167478 ATCGAAGA--GCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGAC 167535
| ||||| ||| ||| | ||| ||| ||| || || ||||| || | | ||
Sbjct 7808 GTGGAAGATCGCTCTCG-TCATCCGTGG-AAGATTTGTGAAGATATAACGAGCAGAAGCA 7751
Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595
|| || || ||||| || || |||||||| ||||| || || | ||||||||
Sbjct 7750 GCGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATA 7691
Query 167596 TTATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAACTT 167653
|| || || ||| || ||| || || || ||| || | | | |||
Sbjct 7690 TTGTT--ACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAGCTT 7633
Query 167654 CGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCT 167713
| || || || || ||| |||| || | || || | | | ||| || ||||| || |
Sbjct 7632 CACCATGATGATATGCAGTCTTCTCCGAAACGTAACCGACAAGCTGAGCGACCTTAATTT 7573
Query 167714 CATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGAC 167773
| | ||||||| | |||||| | | | |||||| || ||| |||||||||||
Sbjct 7572 CCTTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGAC 7513
Query 167774 CATCTGCCACGTGAGCAATTGAGCG 167798
| || |||||| | ||| |||||
Sbjct 7512 CGTCGGCCACGGACGGAATCGAGCG 7488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588970264846200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |