Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq95 183 4e-41 seq6 107 2e-18 seq21 98.7 1e-15 >seq95 Length=57217 Score = 183 bits (202), Expect = 4e-41 Identities = 717/1115 (64%), Gaps = 23/1115 (2%) Strand=Plus/Minus Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978 ||||||| || ||||| | ||| | || | ||||| || | | || ||| || | Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581 Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038 |||| |||| || | |||| |||||||||| || ||||| || || || ||||| | Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521 Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098 | || || ||| | | | ||| | ||||||| || | | | || | Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGA 51461 Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158 | | || || ||||| || ||||| || |||| || ||||| |||||| ||| | Sbjct 51460 AAGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGTTGC 51401 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | || || || || |||| ||| ||||| | ||| ||||| | ||| Sbjct 51400 GGGCCTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGGCAACAA 51341 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCCTTATTGACATA 110276 ||| || || ||||| || || | | | ||| | || ||| || || || | Sbjct 51340 CCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGA-CGT-TCAAGATCCACGAA 51283 Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336 || ||||||| ||| || || || || || | | ||| || | || || Sbjct 51282 GGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTC 51223 Query 110337 CAAAATTTCCGTACACAAGTTGGAACT---CTTAATGACACCCAAGTTCTTCTGATTCGA 110393 || |||||| ||||| | || ||| ||||||| ||| | || ||| || || || Sbjct 51222 CATAATTTCAGTACAGAGATT---ACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGA 51166 Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 ||||||||| ||||||||||| ||||| ||| |||||| || ||||| | || Sbjct 51165 CTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTC 51106 Query 110454 GAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCT 110512 || || || ||| | | || | ||| || |||| | | ||| | | || Sbjct 51105 AAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCT 51047 Query 110513 CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT 110572 |||| | ||| | | ||||||||| | |||||| || || | ||| || || Sbjct 51046 CGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACT 50987 Query 110573 TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632 ||||||| | |||| ||| | ||| | || || | ||||||||| || || | Sbjct 50986 CAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 50927 Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692 | ||||| | || ||||||| ||||| || |||| || | ||| ||||| | Sbjct 50926 GGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 50867 Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752 || || | || || | | ||| | |||||| || || ||||||| |||| || | Sbjct 50866 TTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCAC 50807 Query 110753 CCTTACGACGAC-----CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 | | |||| || ||| ||| ||| || || || ||||| | | | | || Sbjct 50806 C---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGA 50750 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866 |||||||||| || || | || | ||| || ||||| ||| ||| || |||| Sbjct 50749 GCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCAC 50690 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCT 110925 | || | ||| || || | |||||||||||| || ||| || || ||||| ||| Sbjct 50689 GGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCT 50630 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985 |||| ||| | || ||||||||||| ||||| |||| |||| | |||||||| || Sbjct 50629 -TGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGAT 50571 Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 |||||||| || || || || || |||||||| || Sbjct 50570 GACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 >seq6 Length=242052 Score = 107 bits (118), Expect = 2e-18 Identities = 209/304 (69%), Gaps = 11/304 (4%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| ||| |||| || || Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| ||||| |||||||| Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGC---AAAAGGTCGAGACTTGTC--- 119668 || || || |||||||||| || |||||| | | ||| ||| |||||| Sbjct 183721 ACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCG---CTTGTCAGA 183665 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727 || ||| |||||||||| |||||| | || || || |||| || | || || | Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGGATGGTGTCCATAGCGT 183606 Query 119728 CGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGG 119787 ||||||| || | |||| ||||| || || | || || || |||||||| Sbjct 183605 CGAAAAGGAAGTTTCGTCGAGCAGTGTCCTTGATGTAGGTGTCGATAAGGAGAGAGTAGG 183546 Query 119788 TCTC 119791 |||| Sbjct 183545 TCTC 183542 >seq21 Length=50189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 293/445 (66%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417 ||| ||||| ||||| || | ||| || | ||| |||||||| | ||||||||| || | Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869 Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477 ||| ||||||||| ||| || || | ||||||||||| | | || ||| || Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809 Query 167478 ATCGAAGA--GCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGAC 167535 | ||||| ||| ||| | ||| ||| ||| || || ||||| || | | || Sbjct 7808 GTGGAAGATCGCTCTCG-TCATCCGTGG-AAGATTTGTGAAGATATAACGAGCAGAAGCA 7751 Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 || || || ||||| || || |||||||| ||||| || || | |||||||| Sbjct 7750 GCGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATA 7691 Query 167596 TTATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAACTT 167653 || || || ||| || ||| || || || ||| || | | | ||| Sbjct 7690 TTGTT--ACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTAGCTT 7633 Query 167654 CGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCT 167713 | || || || || ||| |||| || | || || | | | ||| || ||||| || | Sbjct 7632 CACCATGATGATATGCAGTCTTCTCCGAAACGTAACCGACAAGCTGAGCGACCTTAATTT 7573 Query 167714 CATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGAC 167773 | | ||||||| | |||||| | | | |||||| || ||| ||||||||||| Sbjct 7572 CCTTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGAC 7513 Query 167774 CATCTGCCACGTGAGCAATTGAGCG 167798 | || |||||| | ||| ||||| Sbjct 7512 CGTCGGCCACGGACGGAATCGAGCG 7488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970264846200