Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq95 178 2e-39
seq6 89.7 6e-13
>seq95
Length=57217
Score = 178 bits (196), Expect = 2e-39
Identities = 717/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Minus
Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154
||||||| ||| | ||||| | |||| || |||||| || || | | ||||||||
Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581
Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214
||| || | ||||| | || || ||||| || | ||||| || ||||| || |
Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521
Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269
|||| | ||| | |||| |||| ||| || || || |||| || | || |
Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGA 51461
Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329
|| | || ||||||||||| ||||| | |||| ||||| || ||||| || ||
Sbjct 51460 AAG-----CGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGA 51406
Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386
|| || || |||| || ||||| | || | | |||||| || || || ||
Sbjct 51405 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTT 51349
Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446
|| ||||| ||| || || ||||| || || | | || | |||| || ||
Sbjct 51348 GGCAACAACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATC 51289
Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506
|| | ||||| || | || || | || || || || |||||| | |
Sbjct 51288 CACGAAGGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGA 51229
Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACT---CTTAATCGTCCCCAAATTCTTTTG 106563
||||| | |||||| ||||| | || ||| |||||| || || | | ||||||
Sbjct 51228 ATACTCCATAATTTCAGTACAGAGATT---ACTGGACTTAATGGTACCAAGGTGCTTTTG 51172
Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623
||| ||| |||| |||||||| || ||||| || || ||||| |||||
Sbjct 51171 GTTGGACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTG 51112
Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CC 106680
| || || || || ||| | | || | |||| | | | || ||| | ||
Sbjct 51111 AGCCTCAAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGTTT--TTCTCCCCTTACC 51055
Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740
|| | |||||| | ||| || ||||| || || || |||||| || ||
Sbjct 51054 CTGCCTCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCC 50995
Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800
|| || | ||||| | ||| | ||| | ||| | || || |||||||||||
Sbjct 50994 AGGACACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAA 50935
Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860
||| || || ||||| |||| | || ||||| | | || |||| || | ||| ||
Sbjct 50934 AAGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 50875
Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 50874 GTTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGC 50815
Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974
|| | || ||||| ||| |||| | || || || || ||||||| | |
Sbjct 50814 GAAGGCACC---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATA 50758
Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034
| || ||||| ||||| ||||| | || | ||| || || || ||| ||
Sbjct 50757 AGCTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC 50698
Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094
|| || | | || || ||||| | |||||||| ||||| ||| ||||| || ||
Sbjct 50697 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGC 50638
Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154
||| | | ||||| | |||||||| | || || || ||||| |||| | || ||
Sbjct 50637 ACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAA 50578
Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196
||| |||||||| || | || ||||| |||||||| ||
Sbjct 50577 GCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq6
Length=242052
Score = 89.7 bits (98), Expect = 6e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || |||||||||||| || || || || || || || |||||| || ||
Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||||||||| |||||||| | ||| | || | | ||| || || |||||||||||
Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722
Query 117393 ACCCTCCAC 117401
||| || ||
Sbjct 183721 ACCTTCGAC 183713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589975055061960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |