Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6 138 3e-27 seq95 86.0 1e-11 >seq6 Length=242052 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| ||||| || || || |||||||||| |||||| | ||||| || Sbjct 168801 ACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCA 168860 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| || ||||| | |||||| || || ||||| || || || ||||| ||| Sbjct 168861 AGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGA 168920 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| || || |||||||| || | || || Sbjct 168921 ATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTG 168980 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 168981 CCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||||||||||||||||||||| ||||| |||| ||| || | ||||| || Sbjct 168514 ACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCCTCT 168573 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || || || |||||||| || || || || || ||||| |||||||| Sbjct 168574 AGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTCTTGG 168633 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || || || | ||| || ||||| |||| ||||| Sbjct 168634 ATCTTGGCCTTGACATTGTCGATTGTATCGCTAGATTCGACCTCAAGAGTAATTGTCTTA 168693 Query 195112 CCTGT 195116 || || Sbjct 168694 CCCGT 168698 Score = 123 bits (136), Expect = 6e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| |||| |||||| || |||||||| ||||||||||| || ||||| | ||| | Sbjct 169618 TACTGTAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCT 169677 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||||| ||||| || || || ||||| || || || |||||| || || ||||||| Sbjct 169678 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGT 169737 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | ||| |||||||| || || | ||||| || || | || || ||||| | |||| Sbjct 169738 CGGAAGACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCA 169797 Query 195140 T 195140 | Sbjct 169798 T 169798 >seq95 Length=57217 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||||||||| |||||| ||||||||||||||||| | || || | ||||||| | Sbjct 50906 TTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGACT 50965 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| |||| | |||||| ||| ||||| |||| || || || || || || | Sbjct 50966 GGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATACGGAGAAGAATTTG 51025 Query 160707 AGACTCTTTATGAAAGATACGA 160728 ||| ||||| || || ||||| Sbjct 51026 AGAAGCTTTACGAGAGCTACGA 51047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109470526333493