Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq95 114 1e-20 seq258 111 2e-19 >seq95 Length=57217 Score = 114 bits (126), Expect = 1e-20 Identities = 441/689 (64%), Gaps = 4/689 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || | ||| || || ||||| || || ||||||| ||| || ||| | || || Sbjct 51276 AAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAAT 51217 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 ||||| ||| ||||||| | || || ||||| | | | || || ||| Sbjct 51216 TTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTT 51157 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || ||||| ||| || |||| ||||| ||| |||||| |||| ||||| Sbjct 51156 GGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGC 51097 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 ||||| || || || ||| ||| | ||| | ||||| | Sbjct 51096 GAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 || | |||||||||||| || || || || | | | ||||||||| ||| ||||| Sbjct 51036 GTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACA 50977 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| | | ||| ||| |||| || || | |||| || | ||| || ||||| || Sbjct 50976 CATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAG 50917 Query 48236 AGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCA 48293 || || ||| | ||| | || || || || || || ||| ||| | ||||| ||| Sbjct 50916 GGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCA 50859 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | || || | || |||||| ||||| || || | ||| || || | |||| || || Sbjct 50858 ATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 50799 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || || ||||| || | |||| ||||| || |||| ||| | ||| || | Sbjct 50798 TTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATG 50739 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 ||||| || || ||| ||||| || | ||| || || | || | ||||| | Sbjct 50738 ATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGA 50679 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| |||||||| || | || || || ||||||| || || ||||| Sbjct 50678 ATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCG 50619 Query 48534 TAAATTCCTTCTATACTATCATCTATCAT 48562 || || || || || |||||| |||| Sbjct 50618 TAGATACCATCAATGGAATCATCCTTCAT 50590 >seq258 Length=65905 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 ||||| || ||||| ||||| || || || ||||| | |||||||||| ||| || || Sbjct 13626 CCCTCATCCCTACTGATCAACTCGTTTGAGAATGTCAGTCCAGGCATCAATCCCCTCTTC 13685 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || |||||||| |||| |||||| || ||||||||||| || ||||| || ||||||| Sbjct 13686 TTCAACCAGAAGATAGCAGCAAAGGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 13745 Query 19102 GCAACTAGTCT 19112 || || || || Sbjct 13746 GCCACCAGCCT 13756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103326465560