Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq95 114 1e-20
seq258 111 2e-19
>seq95
Length=57217
Score = 114 bits (126), Expect = 1e-20
Identities = 441/689 (64%), Gaps = 4/689 (1%)
Strand=Plus/Minus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || | ||| || || ||||| || || ||||||| ||| || ||| | || ||
Sbjct 51276 AAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAAT 51217
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
||||| ||| ||||||| | || || ||||| | | | || || |||
Sbjct 51216 TTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTT 51157
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
|| ||||| ||| || |||| ||||| ||| |||||| |||| |||||
Sbjct 51156 GGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGC 51097
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
||||| || || || ||| ||| | ||| | ||||| |
Sbjct 51096 GAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
|| | |||||||||||| || || || || | | | ||||||||| ||| |||||
Sbjct 51036 GTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACA 50977
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
||| | | ||| ||| |||| || || | |||| || | ||| || ||||| ||
Sbjct 50976 CATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAG 50917
Query 48236 AGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCA 48293
|| || ||| | ||| | || || || || || || ||| ||| | ||||| |||
Sbjct 50916 GGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCA 50859
Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353
| || || | || |||||| ||||| || || | ||| || || | |||| || ||
Sbjct 50858 ATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 50799
Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413
|| || || ||||| || | |||| ||||| || |||| ||| | ||| || |
Sbjct 50798 TTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATG 50739
Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473
||||| || || ||| ||||| || | ||| || || | || | ||||| |
Sbjct 50738 ATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGA 50679
Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533
|| || ||| |||||||| || | || || || ||||||| || || |||||
Sbjct 50678 ATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCG 50619
Query 48534 TAAATTCCTTCTATACTATCATCTATCAT 48562
|| || || || || |||||| ||||
Sbjct 50618 TAGATACCATCAATGGAATCATCCTTCAT 50590
>seq258
Length=65905
Score = 111 bits (122), Expect = 2e-19
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041
||||| || ||||| ||||| || || || ||||| | |||||||||| ||| || ||
Sbjct 13626 CCCTCATCCCTACTGATCAACTCGTTTGAGAATGTCAGTCCAGGCATCAATCCCCTCTTC 13685
Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101
|| |||||||| |||| |||||| || ||||||||||| || ||||| || |||||||
Sbjct 13686 TTCAACCAGAAGATAGCAGCAAAGGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 13745
Query 19102 GCAACTAGTCT 19112
|| || || ||
Sbjct 13746 GCCACCAGCCT 13756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562103326465560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |