Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-19
seq305 95.1 1e-13
seq163 91.5 1e-12
>seq6
Length=242052
Score = 114 bits (126), Expect = 1e-19
Identities = 162/223 (73%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| ||||| ||||| || ||| | ||| || |||||||| | |||||
Sbjct 168791 GAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGG--ATGTTGTAATCGGAAAGAGTA 168848
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||| ||||||||||| || ||||| || | || ||||||||||||||| || ||
Sbjct 168849 CGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCC 168908
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || || ||||| || || || || || || |||| | || | | ||| ||
Sbjct 168909 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAG-GACTCGACTTCAAG 168967
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||| | ||||| || |||||||| || |||||||| ||||||
Sbjct 168968 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCATA 169010
Score = 111 bits (122), Expect = 1e-18
Identities = 161/223 (72%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| ||||| ||| ||||| || ||||| || | ||||||
Sbjct 169301 GAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTT 169358
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||| |||||||| ||||| | || ||||| ||||||||||| |||
Sbjct 169359 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCT 169418
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432
|| || || ||||| || || || || || || |||| | || | | || ||
Sbjct 169419 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAG-GACTCAACCTCAAG 169477
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||| | ||||| || |||||||| || |||||||| ||||||
Sbjct 169478 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCATA 169520
Score = 102 bits (112), Expect = 7e-16
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356
||||||||| | ||||| |||||| | || ||||||||||| || | || |||||
Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 169173
Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416
||||||||||||| ||||| ||||| ||||| || || || || || || ||||
Sbjct 169174 GATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAG 169233
Query 563417 TGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | | || ||||||| ||| || || ||||| || || |||||||| ||||||
Sbjct 169234 -AAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCATA 169292
Score = 100 bits (110), Expect = 2e-15
Identities = 146/202 (72%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| ||||||||||| || ||| | |||| ||| ||||| || | || ||
Sbjct 168504 GAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTG--AATGTTGTAGTCGGAAAGGGTA 168561
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||| || ||||| |||||||||||||| |||| ||||||||| || || || |||
Sbjct 168562 CGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCT 168621
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || ||||| || || || || || |||||||| | || | | || ||
Sbjct 168622 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATC-GCTAGATTCGACCTCAAG 168680
Query 563433 AGTAACAGTTTTACCAGTAAGA 563454
||||| || ||||| ||||||
Sbjct 168681 AGTAATTGTCTTACCCGTAAGA 168702
>seq305
Length=7100
Score = 95.1 bits (104), Expect = 1e-13
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
||||| ||||| || || |||| || ||||| || ||| | |||| || ||||||
Sbjct 6637 GCCAACGATCAGGGCAATCGAACAACACCATCATACGTTGCGTTCAATGACTCTGAACGA 6696
Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTTG 550181
| |||||||||| || || |||||| || || |||||| ||| || |||| |
Sbjct 6697 CTCATTGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACAGTTTTCG 6754
Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241
||||||| || || ||||| | | ||| ||| | |||||||| || |||||||
Sbjct 6755 ATGCTAAGCGGTTGATTGGCCGCAAGTTTGCCGATGCCGAAGTTCAGGCCGACATGAAGC 6814
Query 550242 ATTGGCCTTT 550251
||||||||||
Sbjct 6815 ATTGGCCTTT 6824
>seq163
Length=95501
Score = 91.5 bits (100), Expect = 1e-12
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914
|||||| || ||||| ||||| | || || | ||| || | | || || ||| ||||
Sbjct 88984 ATTTCTCACAGTACCGTCATAAGCAACCTTCAAGTCCTCCATCGCCTTGACCAATCTTCT 88925
Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974
||||||||||||||| || ||||| || | || |||| ||| | |||||||| || |
Sbjct 88924 TTGGATATAACCAGTCTCGGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 88865
Query 390975 CATAACTTGGAAGAAAAATTCCATAGGA 391002
|||| | ||||| | |||||| ||||
Sbjct 88864 CATAGCGTGGAACCAGAATTCCTGAGGA 88837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029254802966710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |