Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-19 seq305 95.1 1e-13 seq163 91.5 1e-12 >seq6 Length=242052 Score = 114 bits (126), Expect = 1e-19 Identities = 162/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||| ||||| || ||| | ||| || |||||||| | ||||| Sbjct 168791 GAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGG--ATGTTGTAATCGGAAAGAGTA 168848 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||||||||| || ||||| || | || ||||||||||||||| || || Sbjct 168849 CGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCC 168908 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || || ||||| || || || || || || |||| | || | | ||| || Sbjct 168909 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAG-GACTCGACTTCAAG 168967 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| | ||||| || |||||||| || |||||||| |||||| Sbjct 168968 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCATA 169010 Score = 111 bits (122), Expect = 1e-18 Identities = 161/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| ||||| ||| ||||| || ||||| || | |||||| Sbjct 169301 GAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTT 169358 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||| |||||||| ||||| | || ||||| ||||||||||| ||| Sbjct 169359 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCT 169418 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432 || || || ||||| || || || || || || |||| | || | | || || Sbjct 169419 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAG-GACTCAACCTCAAG 169477 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| | ||||| || |||||||| || |||||||| |||||| Sbjct 169478 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCATA 169520 Score = 102 bits (112), Expect = 7e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356 ||||||||| | ||||| |||||| | || ||||||||||| || | || ||||| Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 169173 Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 ||||||||||||| ||||| ||||| ||||| || || || || || || |||| Sbjct 169174 GATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAG 169233 Query 563417 TGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | | || ||||||| ||| || || ||||| || || |||||||| |||||| Sbjct 169234 -AAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCATA 169292 Score = 100 bits (110), Expect = 2e-15 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||||||||| || ||| | |||| ||| ||||| || | || || Sbjct 168504 GAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTG--AATGTTGTAGTCGGAAAGGGTA 168561 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| || ||||| |||||||||||||| |||| ||||||||| || || || ||| Sbjct 168562 CGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCT 168621 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || ||||| || || || || || |||||||| | || | | || || Sbjct 168622 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATC-GCTAGATTCGACCTCAAG 168680 Query 563433 AGTAACAGTTTTACCAGTAAGA 563454 ||||| || ||||| |||||| Sbjct 168681 AGTAATTGTCTTACCCGTAAGA 168702 >seq305 Length=7100 Score = 95.1 bits (104), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 ||||| ||||| || || |||| || ||||| || ||| | |||| || |||||| Sbjct 6637 GCCAACGATCAGGGCAATCGAACAACACCATCATACGTTGCGTTCAATGACTCTGAACGA 6696 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTTG 550181 | |||||||||| || || |||||| || || |||||| ||| || |||| | Sbjct 6697 CTCATTGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACAGTTTTCG 6754 Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241 ||||||| || || ||||| | | ||| ||| | |||||||| || ||||||| Sbjct 6755 ATGCTAAGCGGTTGATTGGCCGCAAGTTTGCCGATGCCGAAGTTCAGGCCGACATGAAGC 6814 Query 550242 ATTGGCCTTT 550251 |||||||||| Sbjct 6815 ATTGGCCTTT 6824 >seq163 Length=95501 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 |||||| || ||||| ||||| | || || | ||| || | | || || ||| |||| Sbjct 88984 ATTTCTCACAGTACCGTCATAAGCAACCTTCAAGTCCTCCATCGCCTTGACCAATCTTCT 88925 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||||||||| || ||||| || | || |||| ||| | |||||||| || | Sbjct 88924 TTGGATATAACCAGTCTCGGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 88865 Query 390975 CATAACTTGGAAGAAAAATTCCATAGGA 391002 |||| | ||||| | |||||| |||| Sbjct 88864 CATAGCGTGGAACCAGAATTCCTGAGGA 88837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029254802966710