Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 1e-13
>seq6
Length=242052
Score = 91.5 bits (100), Expect = 1e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 48589 TGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTT 48648
|||||||||| | | ||||| | || ||||||||||| |||||||| |||| ||| || |
Sbjct 169114 TGTAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCT 169173
Query 48649 GATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTG 48708
|||| | |||| || ||||| || |||||| || ||| | | | || |
Sbjct 169174 GATCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAG 169233
Query 48709 ACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| | ||| ||||| | ||||| || ||||| || | || || || |||||||||||
Sbjct 169234 AAGACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| || | ||| || ||| ||| ||||| || ||||| || || ||| ||||
Sbjct 169302 AGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGG 169361
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| ||||| || || | |||||| || || | |||| || |||
Sbjct 169362 CCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCC 169421
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 169422 TTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTG 169481
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || | ||| || || |||||||||||
Sbjct 169482 ATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380933983354617
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |