Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq95 159 6e-34 seq6 109 1e-18 >seq95 Length=57217 Score = 159 bits (176), Expect = 6e-34 Identities = 549/842 (65%), Gaps = 27/842 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424 || ||||| ||||| |||| ||| | || || | |||| || || ||| | || Sbjct 51599 CCTTCGTAAGACTCATAGGTACCCTGTTCCTCAGCAAGCTCGCATGAA-GCCTCAAGCGC 51541 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||| |||||||| |||||| | ||||| | ||||||| |||| ||| Sbjct 51540 CGCGTGGTAAATGGTCTCGAAGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAA 51481 Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||| || || | |||||| |||| || || || || || || | || | || | Sbjct 51480 CGGCATGCGAAGGGCCATGAAAG-CGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTC 51422 Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 || | | ||||||| |||| || || ||||| ||||| |||| | || | Sbjct 51421 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTAATGAC 51364 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 | ||| ||||||| | | || || | ||| |||||||| |||| | Sbjct 51363 AGTGTCGAGGTTCTTGGCAACAACCTTGGTAATCTCATGCAGCTTCT------TGAAGTC 51310 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 | ||| | ||| | | ||||| || || || |||| || ||||| Sbjct 51309 GTAGACGC----GACGTTCAAGA--TCCACGAAGGCAGGAAGAGCAAGAGAAGCGAGGTT 51256 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 ||| ||||| ||||| || | ||||| || || || |||||||| || ||| | Sbjct 51255 ACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCAGTACAGAGATTACTGGA 51196 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||| ||||| || ||||| || || || |||||| ||||| || ||||| || || Sbjct 51195 CTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCGGCATCCTTATAACAGAT 51136 Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899 ||||||| |||||||| ||||||| | || || | ||| || | ||||| | Sbjct 51135 GTAAGGGACA-CCAGTCTCTGTCTGAGCCTCAAGGATAGCGAACCAAAGCT-TCTGGGCT 51078 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959 | | || | | | ||||| ||| | | || || ||| | ||||| Sbjct 51077 TTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTCTCG---TAAAGCTTCTCAAAT 51021 Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019 | ||| ||||| | ||| | || || |||||| ||||||||||| || |||||| | Sbjct 51020 TCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACATAAGGGTCCAGTCC 50961 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 | | || ||| | || |||||| || || |||||||| || || | || ||||| Sbjct 50960 CCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAAAGATCA 50901 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139 | | || ||||||| || | ||| ||||| | || | || ||||| | ||| Sbjct 50900 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAATCAAATACATCA 50841 Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199 |||||||| ||||| ||||||| ||| | || || || |||||||||||||| || || Sbjct 50840 GCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCTTGGTCA 50781 Query 222200 AC 222201 || Sbjct 50780 AC 50779 Score = 84.2 bits (92), Expect = 4e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGC 222534 |||||| || | ||| ||||| | ||| || | |||||| | ||||| || | ||| Sbjct 50455 AGACATGAGGTTGTAGGTCTCGATCACTTTGTCAATGTTGGCACCGTGGATACCAACGGC 50396 Query 222535 GCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC--CCTTGGAGCTGGAGAGCAGG 222592 | || |||| ||||| ||| || | ||| ||| || | | | |||| ||| Sbjct 50395 GACTCGCATGATCATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGA--AGG 50338 Query 222593 TACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACC 222652 || ||| | || ||||||||||| |||||||||||| | ||||||||||| | | || Sbjct 50337 TATGATCTCTCAAGAGTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATA 50278 Query 222653 ACGGCGGCGTCCAG 222666 | ||||| ||| || Sbjct 50277 ATGGCGGAGTCAAG 50264 >seq6 Length=242052 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| || | || || ||||| || || || ||||| ||| ||||| || Sbjct 183683 TTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTC 183742 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || |||||| || || ||| || |||||| Sbjct 183743 GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAG 183802 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||| | |||||||||||||||| || |||||||| || |||| ||| Sbjct 183803 CTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 183855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835755373760