Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq95 159 6e-34
seq6 109 1e-18
>seq95
Length=57217
Score = 159 bits (176), Expect = 6e-34
Identities = 549/842 (65%), Gaps = 27/842 (3%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424
|| ||||| ||||| |||| ||| | || || | |||| || || ||| | ||
Sbjct 51599 CCTTCGTAAGACTCATAGGTACCCTGTTCCTCAGCAAGCTCGCATGAA-GCCTCAAGCGC 51541
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484
|||||||| |||||||| |||||| | ||||| | ||||||| |||| |||
Sbjct 51540 CGCGTGGTAAATGGTCTCGAAGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAA 51481
Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
||||| || || | |||||| |||| || || || || || || | || | || |
Sbjct 51480 CGGCATGCGAAGGGCCATGAAAG-CGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTC 51422
Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
|| | | ||||||| |||| || || ||||| ||||| |||| | || |
Sbjct 51421 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTAATGAC 51364
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
| ||| ||||||| | | || || | ||| |||||||| |||| |
Sbjct 51363 AGTGTCGAGGTTCTTGGCAACAACCTTGGTAATCTCATGCAGCTTCT------TGAAGTC 51310
Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721
| ||| | ||| | | ||||| || || || |||| || |||||
Sbjct 51309 GTAGACGC----GACGTTCAAGA--TCCACGAAGGCAGGAAGAGCAAGAGAAGCGAGGTT 51256
Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781
||| ||||| ||||| || | ||||| || || || |||||||| || ||| |
Sbjct 51255 ACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCAGTACAGAGATTACTGGA 51196
Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841
||| ||||| || ||||| || || || |||||| ||||| || ||||| || ||
Sbjct 51195 CTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCGGCATCCTTATAACAGAT 51136
Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899
||||||| |||||||| ||||||| | || || | ||| || | ||||| |
Sbjct 51135 GTAAGGGACA-CCAGTCTCTGTCTGAGCCTCAAGGATAGCGAACCAAAGCT-TCTGGGCT 51078
Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959
| | || | | | ||||| ||| | | || || ||| | |||||
Sbjct 51077 TTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTCTCG---TAAAGCTTCTCAAAT 51021
Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019
| ||| ||||| | ||| | || || |||||| ||||||||||| || |||||| |
Sbjct 51020 TCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGACACATAAGGGTCCAGTCC 50961
Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079
| | || ||| | || |||||| || || |||||||| || || | || |||||
Sbjct 50960 CCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAAAGATCA 50901
Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139
| | || ||||||| || | ||| ||||| | || | || ||||| | |||
Sbjct 50900 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAATCAAATACATCA 50841
Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199
|||||||| ||||| ||||||| ||| | || || || |||||||||||||| || ||
Sbjct 50840 GCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCTTGGTCA 50781
Query 222200 AC 222201
||
Sbjct 50780 AC 50779
Score = 84.2 bits (92), Expect = 4e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGC 222534
|||||| || | ||| ||||| | ||| || | |||||| | ||||| || | |||
Sbjct 50455 AGACATGAGGTTGTAGGTCTCGATCACTTTGTCAATGTTGGCACCGTGGATACCAACGGC 50396
Query 222535 GCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC--CCTTGGAGCTGGAGAGCAGG 222592
| || |||| ||||| ||| || | ||| ||| || | | | |||| |||
Sbjct 50395 GACTCGCATGATCATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGA--AGG 50338
Query 222593 TACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACC 222652
|| ||| | || ||||||||||| |||||||||||| | ||||||||||| | | ||
Sbjct 50337 TATGATCTCTCAAGAGTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATA 50278
Query 222653 ACGGCGGCGTCCAG 222666
| ||||| ||| ||
Sbjct 50277 ATGGCGGAGTCAAG 50264
>seq6
Length=242052
Score = 109 bits (120), Expect = 1e-18
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| || ||||| || | || || ||||| || || || ||||| ||| ||||| ||
Sbjct 183683 TTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTC 183742
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| ||||||||||||||||| || || |||||| || || ||| || ||||||
Sbjct 183743 GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAG 183802
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042
|||||| | |||||||||||||||| || |||||||| || |||| |||
Sbjct 183803 CTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 183855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928835755373760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |