Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq305 122 6e-22 seq6 116 2e-20 >seq305 Length=7100 Score = 122 bits (134), Expect = 6e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460 ||||| || || || ||| |||||||||||||||| ||| | || | ||| |||||| Sbjct 6637 GCCAACGATCAGGGCAATCGAACAACACCATCATACGTTGCGTTCAATGACTCTGAACGA 6696 Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520 || ||||| ||||| || || |||||| |||| |||||| || || |||| ||| Sbjct 6697 CTCATTGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACAGTTTTCGAT 6756 Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580 ||||| | |||||||| || || |||| ||| || || || | || ||| ||| Sbjct 6757 GCTAAGCGGTTGATTGGCCGCAAGTTTGCCGATGCCGAAGTTCAGGCCGACATGAAGCAT 6816 Query 474581 TGGCCTTTTAAGGTG 474595 ||||||||||||||| Sbjct 6817 TGGCCTTTTAAGGTG 6831 >seq6 Length=242052 Score = 116 bits (128), Expect = 2e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| || || || | || ||||| | ||||| Sbjct 168788 ACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGT 168847 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| |||||||| || |||||||| || | ||||| ||||||||||| || || Sbjct 168848 ACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACC 168907 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| |||||||| |||||| || || || |||| | |||||| Sbjct 168908 CTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAG 168967 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| |||||||| |||||||| || Sbjct 168968 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTG 169006 Score = 116 bits (128), Expect = 2e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||||||||||||||||| || ||||| | || || || ||||||||| Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || ||||||||||| |||||||| |||||| || || || |||| | | Sbjct 169413 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 169472 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 169473 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTG 169516 Score = 104 bits (114), Expect = 2e-16 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | ||||| |||||| | |||||||| ||||| || | ||||| ||| Sbjct 169116 TAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGA 169175 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-T 480715 ||||||||||| |||||||| || |||||||| |||||| || || || |||| Sbjct 169176 TCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAA 169235 Query 480716 GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| |||||||| || ||||| || ||||| |||||||| || Sbjct 169236 GACTCGA-CCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTG 169288 Score = 98.7 bits (108), Expect = 6e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || ||||| || || || || | || || Sbjct 168501 ACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGT 168560 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || ||||||||||| |||||||| || ||||| ||||| || || || || Sbjct 168561 ACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACC 168620 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||||||||| ||||| |||||| || || ||||| Sbjct 168621 TTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATC 168662 Score = 96.9 bits (106), Expect = 2e-14 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| ||| ||||||||| ||||| |||||||| || | || || || |||||||| Sbjct 169632 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGG 169691 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724 || || |||||||| || ||||| |||||| || || || || | | | | | Sbjct 169692 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACT 169751 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || || ||||| ||||||||||| ||||| |||||||| || Sbjct 169752 T-CGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTG 169795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268145784910292