Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq305 122 6e-22
seq6 116 2e-20
>seq305
Length=7100
Score = 122 bits (134), Expect = 6e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||| || || || ||| |||||||||||||||| ||| | || | ||| ||||||
Sbjct 6637 GCCAACGATCAGGGCAATCGAACAACACCATCATACGTTGCGTTCAATGACTCTGAACGA 6696
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
|| ||||| ||||| || || |||||| |||| |||||| || || |||| |||
Sbjct 6697 CTCATTGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACAGTTTTCGAT 6756
Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580
||||| | |||||||| || || |||| ||| || || || | || ||| |||
Sbjct 6757 GCTAAGCGGTTGATTGGCCGCAAGTTTGCCGATGCCGAAGTTCAGGCCGACATGAAGCAT 6816
Query 474581 TGGCCTTTTAAGGTG 474595
|||||||||||||||
Sbjct 6817 TGGCCTTTTAAGGTG 6831
>seq6
Length=242052
Score = 116 bits (128), Expect = 2e-20
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| ||||| || || || | || ||||| | |||||
Sbjct 168788 ACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGT 168847
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| |||||||| || |||||||| || | ||||| ||||||||||| || ||
Sbjct 168848 ACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACC 168907
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|||||||| |||||||| |||||| || || || |||| | ||||||
Sbjct 168908 CTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAG 168967
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| ||||| |||||||| |||||||| ||
Sbjct 168968 AGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTG 169006
Score = 116 bits (128), Expect = 2e-20
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||||| | ||||||||||||||||| || ||||| | || || || |||||||||
Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725
|| ||||||||||| |||||||| |||||| || || || |||| | |
Sbjct 169413 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACC 169472
Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct 169473 TCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTG 169516
Score = 104 bits (114), Expect = 2e-16
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656
||||||| | ||||| |||||| | |||||||| ||||| || | ||||| |||
Sbjct 169116 TAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGA 169175
Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-T 480715
||||||||||| |||||||| || |||||||| |||||| || || || ||||
Sbjct 169176 TCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAA 169235
Query 480716 GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | ||||| |||||||| || ||||| || ||||| |||||||| ||
Sbjct 169236 GACTCGA-CCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTG 169288
Score = 98.7 bits (108), Expect = 6e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||||||||| || ||||| || || || || | || ||
Sbjct 168501 ACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGT 168560
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| || ||||||||||| |||||||| || ||||| ||||| || || || ||
Sbjct 168561 ACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACC 168620
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
|||||||||||| ||||| |||||| || || |||||
Sbjct 168621 TTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATC 168662
Score = 96.9 bits (106), Expect = 2e-14
Identities = 122/165 (74%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| ||| ||||||||| ||||| |||||||| || | || || || ||||||||
Sbjct 169632 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGG 169691
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724
|| || |||||||| || ||||| |||||| || || || || | | | | |
Sbjct 169692 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACT 169751
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | || || ||||| ||||||||||| ||||| |||||||| ||
Sbjct 169752 T-CGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTG 169795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268145784910292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |