Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq95 168 8e-37 seq110 95.1 1e-14 seq21 89.7 6e-13 seq6 89.7 6e-13 >seq95 Length=57217 Score = 168 bits (186), Expect = 8e-37 Identities = 715/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Plus Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || |||||||| ||||| || | || |||||||| ||||| || | |||| ||| Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || || || || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 ||||| |||||||| | ||||| || || | | || || || ||| || Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 50715 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || ||| | || | ||||| ||||| ||||| || | | | ||||||| || || Sbjct 50716 ACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCGA 50775 Query 75566 TATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 || || | |||| || ||||| || || |||| |||| | || || Sbjct 50776 TACGTTGACCAAGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCC 50832 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| | | || ||| |||| ||| | ||||| ||| | || |||| Sbjct 50833 TGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 50892 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | ||||| || | |||| ||||| || || |||||||||||||| || || Sbjct 50893 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAA 50952 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | ||| | ||| | ||| | ||||| | || || || || |||||| Sbjct 50953 TCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATAC 51012 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTA----GAGCCAATG 75854 || || || ||||| || ||| | || | ||||| |||||| ||| || Sbjct 51013 GGAGAAGAATTTGAGAAGCTTTACGAGAGCTACG-AGAGGCAGGGTAAGGGGAGAAAA-- 51069 Query 75855 CGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 ||| | |||| | || | ||||| ||||| || | | ||||| |||||||| Sbjct 51070 --ACTATCAAAGCC-CAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGGT 51126 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 || || || ||| |||||||| ||| ||| ||||||||| | | || Sbjct 51127 GTCCCTTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGGT 51186 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || || ||| | ||||| || || |||||| | ||||| | | |||||| Sbjct 51187 ACCATTAAGTCCAGTAATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAGGTT 51246 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 || || || || | || || | || ||||| | || || || |||| Sbjct 51247 GCCGTCTGTAACCTCGCTTCTCTTGCTCTTCCTGCCTTCGTGGATCTTGAACGTCGCGTC 51306 Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 | || | | || || ||||| || || ||| ||||| |||| || || || ||| Sbjct 51307 TACGACTTCAAGAAGCTGCATGAGATTACCAAGGTTGTTGCCAAGAACCTCGACACTGTC 51366 Query 76154 ATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 ||| | | || | ||||| || |||| || || || || || ||||| || || Sbjct 51367 ATTACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 51423 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA--- 76267 ||| |||| | ||||| ||||||||||| || | ||| || | || |||| Sbjct 51424 CCTGTTGGCCTTGGTGTCCAAGGTCTCGCTGACG-----CTTTCATGGCCCTTCGCATGC 51478 Query 76268 --TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 || || || ||| |||| |||| | ||| | ||||| || ||||| || |||| Sbjct 51479 CGTTCGACTCTCTTGAGGCCAGGGAGCTCAATATCCAGATCTTCGAGACCATTTACCACG 51538 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | | || ||||| || || | ||||| | || ||| |||||||| | | || | Sbjct 51539 CGGCGCTTGAGGCTTCATGCGAGCTTGCTGAGGAACAGGGTACCTATGAGTCTTACGAAG 51598 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 | |||||| || |||| | ||||||| ||| ||||||| Sbjct 51599 GCTCTCCCCTTTCTAAAGGTATCCTTCAGTATGACATGTGGG 51640 >seq110 Length=133707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||||||||| ||||| ||||||||| |||| | ||| || ||||| || |||||||| Sbjct 78709 TGGTGCCAAAATCCCTCGAGGCGCCATTCTTTCTGGTCCTCCCGGTACCGGTAAGACCCT 78768 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT-CATCCAGTGCTCTGCCGCAA 175393 ||||||| || | ||| |||||| | ||| || || | | | || ||||| | Sbjct 78769 CCTCGCCAAGGCTACCGCCGGTGAAGCCGGTGTGCCTTTCCTTTCTGT-CTCTGGTTCCG 78827 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | || || || |||||||| ||||| ||| || | || || || | || | || || Sbjct 78828 AGTTCGTCGAAATGTTTGTCGGTGTCGGTCCCTCCCGAGTGCGTGACTTGTTCGCAAACG 78887 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509 | | || || |||||| ||||| | ||||| ||||| ||| | |||||| Sbjct 78888 CTAAGAAGAACGCCCCCTGTATTATCTTCGTCGATGAAATTGACGCGATCGGCAAG 78943 >seq21 Length=50189 Score = 89.7 bits (98), Expect = 6e-13 Identities = 277/426 (65%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417 |||| || |||||||| ||| ||| | || || | | || ||| ||| | |||| Sbjct 7504 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAATC 7563 Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477 ||| | ||||| ||||| || || || | | || || |||| ||| |||| || | Sbjct 7564 TCACCAAGGAAATTAAGGTCGCTCAGCTTGTCGGTTACGTTTCGGAGAAGACTGCATATC 7623 Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 | |||||||||| || || || || | || ||| | ||| || Sbjct 7624 ATCATGGTGAAGCTAGTTTGACGTCTACCATCATCGGCTTAGCACAAAACTTTGTCGGCA 7683 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597 ||||| || || || | || || ||||| |||||||| || || ||||||| Sbjct 7684 GTAACAATATCAATCTGTTAGATCCCAACGGTCAGTTTGGTACTCGACTTGCAGGTGGTA 7743 Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATC 14656 | || ||| || | | || || |||||||| ||| ||| ||| | | | |||| Sbjct 7744 AAGACGCTGCTTCTGCTCGTTATATCTTCACAAATCTT-CCACGGATGACGAGAGCGATC 7802 Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAA 14716 || | ||| || ||| | ||||||||||| | ||| || || ||||||| Sbjct 7803 TTCCACCCTGCAGACGACGGATTGCTCAACTACTTAGTCGAGGACGGTATGAGCATTGAA 7862 Query 14717 CCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGT 14776 ||||||| || ||||||||| | || ||||| | | ||||| | || ||||||||| Sbjct 7863 CCAGACTATTTCATGCCAACCGTTCCGATGGTGTTGATCAATGGTGCAGATGGTATCGGT 7922 Query 14777 ACGGGT 14782 || ||| Sbjct 7923 ACTGGT 7928 >seq6 Length=242052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 || || |||||||||||||| || || ||| | | || | ||| | |||||||| ||| Sbjct 183713 GTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGT 183772 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAG 65220 |||||||| || || |||||| || || || || || || || |||||||||||| Sbjct 183773 CTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACC 183832 Query 65221 GAGTTTGCC 65229 || |||||| Sbjct 183833 GACTTTGCC 183841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563790903520