Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq95 168 8e-37
seq110 95.1 1e-14
seq21 89.7 6e-13
seq6 89.7 6e-13
>seq95
Length=57217
Score = 168 bits (186), Expect = 8e-37
Identities = 715/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Plus
Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385
|| |||||||| ||||| || | || |||||||| ||||| || | |||| |||
Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595
Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445
|| || || || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655
Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505
||||| |||||||| | ||||| || || | | || || || ||| ||
Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 50715
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| || ||| | || | ||||| ||||| ||||| || | | | ||||||| || ||
Sbjct 50716 ACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCGA 50775
Query 75566 TATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619
|| || | |||| || ||||| || || |||| |||| | || ||
Sbjct 50776 TACGTTGACCAAGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCC 50832
Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679
||||| || ||| | | || ||| |||| ||| | ||||| ||| | || ||||
Sbjct 50833 TGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 50892
Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739
|| | | ||||| || | |||| ||||| || || |||||||||||||| || ||
Sbjct 50893 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAA 50952
Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799
| ||| | ||| | ||| | ||||| | || || || || ||||||
Sbjct 50953 TCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATAC 51012
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTA----GAGCCAATG 75854
|| || || ||||| || ||| | || | ||||| |||||| ||| ||
Sbjct 51013 GGAGAAGAATTTGAGAAGCTTTACGAGAGCTACG-AGAGGCAGGGTAAGGGGAGAAAA-- 51069
Query 75855 CGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913
||| | |||| | || | ||||| ||||| || | | ||||| ||||||||
Sbjct 51070 --ACTATCAAAGCC-CAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGGT 51126
Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973
|| || || ||| |||||||| ||| ||| ||||||||| | | ||
Sbjct 51127 GTCCCTTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGGT 51186
Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033
|| || ||| | ||||| || || |||||| | ||||| | | ||||||
Sbjct 51187 ACCATTAAGTCCAGTAATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAGGTT 51246
Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093
|| || || || | || || | || ||||| | || || || ||||
Sbjct 51247 GCCGTCTGTAACCTCGCTTCTCTTGCTCTTCCTGCCTTCGTGGATCTTGAACGTCGCGTC 51306
Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153
| || | | || || ||||| || || ||| ||||| |||| || || || |||
Sbjct 51307 TACGACTTCAAGAAGCTGCATGAGATTACCAAGGTTGTTGCCAAGAACCTCGACACTGTC 51366
Query 76154 ATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210
||| | | || | ||||| || |||| || || || || || ||||| || ||
Sbjct 51367 ATTACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 51423
Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA--- 76267
||| |||| | ||||| ||||||||||| || | ||| || | || ||||
Sbjct 51424 CCTGTTGGCCTTGGTGTCCAAGGTCTCGCTGACG-----CTTTCATGGCCCTTCGCATGC 51478
Query 76268 --TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325
|| || || ||| |||| |||| | ||| | ||||| || ||||| || ||||
Sbjct 51479 CGTTCGACTCTCTTGAGGCCAGGGAGCTCAATATCCAGATCTTCGAGACCATTTACCACG 51538
Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385
| | || ||||| || || | ||||| | || ||| |||||||| | | || |
Sbjct 51539 CGGCGCTTGAGGCTTCATGCGAGCTTGCTGAGGAACAGGGTACCTATGAGTCTTACGAAG 51598
Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427
| |||||| || |||| | ||||||| ||| |||||||
Sbjct 51599 GCTCTCCCCTTTCTAAAGGTATCCTTCAGTATGACATGTGGG 51640
>seq110
Length=133707
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334
||||||||| ||||| ||||||||| |||| | ||| || ||||| || ||||||||
Sbjct 78709 TGGTGCCAAAATCCCTCGAGGCGCCATTCTTTCTGGTCCTCCCGGTACCGGTAAGACCCT 78768
Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT-CATCCAGTGCTCTGCCGCAA 175393
||||||| || | ||| |||||| | ||| || || | | | || ||||| |
Sbjct 78769 CCTCGCCAAGGCTACCGCCGGTGAAGCCGGTGTGCCTTTCCTTTCTGT-CTCTGGTTCCG 78827
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| || || || |||||||| ||||| ||| || | || || || | || | || ||
Sbjct 78828 AGTTCGTCGAAATGTTTGTCGGTGTCGGTCCCTCCCGAGTGCGTGACTTGTTCGCAAACG 78887
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509
| | || || |||||| ||||| | ||||| ||||| ||| | ||||||
Sbjct 78888 CTAAGAAGAACGCCCCCTGTATTATCTTCGTCGATGAAATTGACGCGATCGGCAAG 78943
>seq21
Length=50189
Score = 89.7 bits (98), Expect = 6e-13
Identities = 277/426 (65%), Gaps = 2/426 (0%)
Strand=Plus/Plus
Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417
|||| || |||||||| ||| ||| | || || | | || ||| ||| | ||||
Sbjct 7504 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAATC 7563
Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477
||| | ||||| ||||| || || || | | || || |||| ||| |||| || |
Sbjct 7564 TCACCAAGGAAATTAAGGTCGCTCAGCTTGTCGGTTACGTTTCGGAGAAGACTGCATATC 7623
Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537
| |||||||||| || || || || | || ||| | ||| ||
Sbjct 7624 ATCATGGTGAAGCTAGTTTGACGTCTACCATCATCGGCTTAGCACAAAACTTTGTCGGCA 7683
Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597
||||| || || || | || || ||||| |||||||| || || |||||||
Sbjct 7684 GTAACAATATCAATCTGTTAGATCCCAACGGTCAGTTTGGTACTCGACTTGCAGGTGGTA 7743
Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATC 14656
| || ||| || | | || || |||||||| ||| ||| ||| | | | ||||
Sbjct 7744 AAGACGCTGCTTCTGCTCGTTATATCTTCACAAATCTT-CCACGGATGACGAGAGCGATC 7802
Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAA 14716
|| | ||| || ||| | ||||||||||| | ||| || || |||||||
Sbjct 7803 TTCCACCCTGCAGACGACGGATTGCTCAACTACTTAGTCGAGGACGGTATGAGCATTGAA 7862
Query 14717 CCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGT 14776
||||||| || ||||||||| | || ||||| | | ||||| | || |||||||||
Sbjct 7863 CCAGACTATTTCATGCCAACCGTTCCGATGGTGTTGATCAATGGTGCAGATGGTATCGGT 7922
Query 14777 ACGGGT 14782
|| |||
Sbjct 7923 ACTGGT 7928
>seq6
Length=242052
Score = 89.7 bits (98), Expect = 6e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160
|| || |||||||||||||| || || ||| | | || | ||| | |||||||| |||
Sbjct 183713 GTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGT 183772
Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAG 65220
|||||||| || || |||||| || || || || || || || ||||||||||||
Sbjct 183773 CTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACC 183832
Query 65221 GAGTTTGCC 65229
|| ||||||
Sbjct 183833 GACTTTGCC 183841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596563790903520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |