Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq95 93.3 1e-13 seq364 87.8 5e-12 seq256 84.2 6e-11 >seq95 Length=57217 Score = 93.3 bits (102), Expect = 1e-13 Identities = 272/415 (66%), Gaps = 7/415 (2%) Strand=Plus/Minus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| ||| || | ||| ||| | || |||||||| || | || | | Sbjct 50948 ACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACC 50889 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | || || ||||||| || || | ||| || | ||||| || ||| Sbjct 50888 TCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGC 50829 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || ||||| || || || |||| | |||| ||||| || || || || |||||| Sbjct 50828 TCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCA 50769 Query 156087 GT--CTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 || | | | ||| | | ||||||||||| ||||| || || || ||||| ||| Sbjct 50768 GTGGCGTCAT-AAG-CTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGG 50711 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||| | || || | || | ||| ||||| || || ||||||||||| | | Sbjct 50710 CAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCT 50651 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 | || || ||||| || ||| | ||||| | | ||||| ||||| |||||||| | || Sbjct 50650 TGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCA 50591 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319 | | || ||| |||| || | || || || || || || || ||||| || Sbjct 50590 TGGCTACGAGAAAGCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 >seq364 Length=30742 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||||| ||||||||||||||||||||| | |||||||||||| || | | ||| || Sbjct 1706 AATCAAACAATCACGCTCCATTTCACCTAGACGAAGACCACCGTCCTTCGAACGACCTTC 1765 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACC 251588 | |||||||||||| |||||| || |||| || Sbjct 1766 AGTAGGCTGACGAGTAAGATTAGCCCTAGGGCC 1798 >seq256 Length=23044 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | |||||||| ||| ||||||||||| |||||||||||||| || || || Sbjct 11196 TGGCCAATAGTCATTCGAGAAGGAATAGCATGCGGATTGATGATGATATCAGGAACAAGA 11255 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || |||||||| ||||| | ||| | | ||| || | || ||||| || || || Sbjct 11256 CCCTCCGCAGTGAACGGCATGT-CTTCTTGGCGATAGGTGATACCGATAGTACCTTTCTG 11314 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || ||| ||||| ||||| || Sbjct 11315 ACCGTGTCGGGAAGCAAACTTGTCACCTAT 11344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471802909880523