Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq95 93.3 1e-13
seq364 87.8 5e-12
seq256 84.2 6e-11
>seq95
Length=57217
Score = 93.3 bits (102), Expect = 1e-13
Identities = 272/415 (66%), Gaps = 7/415 (2%)
Strand=Plus/Minus
Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969
||||||| ||| || | ||| ||| | || |||||||| || | || | |
Sbjct 50948 ACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACC 50889
Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029
||||| | || || ||||||| || || | ||| || | ||||| || |||
Sbjct 50888 TCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGC 50829
Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086
|| ||||| || || || |||| | |||| ||||| || || || || ||||||
Sbjct 50828 TCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCA 50769
Query 156087 GT--CTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144
|| | | | ||| | | ||||||||||| ||||| || || || ||||| |||
Sbjct 50768 GTGGCGTCAT-AAG-CTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGG 50711
Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204
||| | || || | || | ||| ||||| || || ||||||||||| | |
Sbjct 50710 CAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCT 50651
Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264
| || || ||||| || ||| | ||||| | | ||||| ||||| |||||||| | ||
Sbjct 50650 TGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCA 50591
Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319
| | || ||| |||| || | || || || || || || || ||||| ||
Sbjct 50590 TGGCTACGAGAAAGCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq364
Length=30742
Score = 87.8 bits (96), Expect = 5e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555
||||| ||||||||||||||||||||| | |||||||||||| || | | ||| ||
Sbjct 1706 AATCAAACAATCACGCTCCATTTCACCTAGACGAAGACCACCGTCCTTCGAACGACCTTC 1765
Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACC 251588
| |||||||||||| |||||| || |||| ||
Sbjct 1766 AGTAGGCTGACGAGTAAGATTAGCCCTAGGGCC 1798
>seq256
Length=23044
Score = 84.2 bits (92), Expect = 6e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||| | |||||||| ||| ||||||||||| |||||||||||||| || || ||
Sbjct 11196 TGGCCAATAGTCATTCGAGAAGGAATAGCATGCGGATTGATGATGATATCAGGAACAAGA 11255
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957
|| || |||||||| ||||| | ||| | | ||| || | || ||||| || || ||
Sbjct 11256 CCCTCCGCAGTGAACGGCATGT-CTTCTTGGCGATAGGTGATACCGATAGTACCTTTCTG 11314
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| || ||| ||||| ||||| ||
Sbjct 11315 ACCGTGTCGGGAAGCAAACTTGTCACCTAT 11344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471802909880523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |