Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-21 seq95 104 3e-16 seq284 87.8 2e-11 >seq6 Length=242052 Score = 120 bits (132), Expect = 4e-21 Identities = 205/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | ||||| |||| ||| || |||||||| || ||||| Sbjct 183823 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCAGGCATGAGACCTCGCTT 183764 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | |||| || ||||| ||||| || |||||||| || || Sbjct 183763 CTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGATACCTTCGACGGCAGCGAA 183704 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 ||||||| ||||| | || | || | ||||| |||||| | || Sbjct 183703 AGCGATGAGTCGCTCACCGAA----ACAAGATC--GCTTGTCAGAGATCCATCGAAGAGC 183650 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCT 869414 |||||||||||| || | | | || | ||||| || ||| ||||| ||| || | Sbjct 183649 CCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTCGAAA-AGGAAGT-TT 183592 Query 869415 TTTCG-GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || | |||||||| ||||||||||| ||||| || |||||||| Sbjct 183591 CGTCGAGCAGTGTCCTTGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTC 183542 Score = 96.9 bits (106), Expect = 4e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||||||||||| |||||| | ||| ||||||| |||||| | ||| ||||||| Sbjct 184161 CTCGAAAAAGTTGGCCTTGCCTTGGAGGGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 184102 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || | ||| ||| || | | | || || ||||||||||||||||| || Sbjct 184101 AGAGTTCCAAATCTTCTCGTTACCCAAAGCAACAAGAAGACGGTCGGCGACAAACTCAAT 184042 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 ||| ||||||||||| ||| ||||| ||||| || Sbjct 184041 GTATTGGCACATGAGCTTGGCATTCATACCGATAAG 184006 >seq95 Length=57217 Score = 104 bits (114), Expect = 3e-16 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| || || ||| ||| | | | |||||||| || | || ||||| || Sbjct 50786 TGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATACCGTTAGAG 50727 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||| || || | ||||| ||| || || | ||||| | || || Sbjct 50726 TAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 50667 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || | ||||||||| | || || ||||| || |||||||| || || Sbjct 50666 ATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATCA 50607 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || || |||||||| | ||||||||||| || || | || || | | || ||| Sbjct 50606 ATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGCCGGGGAGTACCG 50547 Query 1630306 GCGTTGAAGAGC 1630317 || ||||| ||| Sbjct 50546 GCATTGAAAAGC 50535 >seq284 Length=10241 Score = 87.8 bits (96), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18254 TCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCA 18313 ||||||| ||||| ||| |||| | || || || | || ||||||| |||| || Sbjct 1461 TCCAGTCTGGCACCGAGCACGGTGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACA 1520 Query 18314 ACCGCGACCAGCGGCCCGTCGACTATTCCGACA-TGTGCAAGGTGCCGCGGCCCTCACAC 18372 || ||||| || || |||||| |||| | || | | || || || || || Sbjct 1521 ACAAGGACCAACGACCTCACGACTACGCCGAGACTGATCTTTATCCC-CGACCTTCCCAT 1579 Query 18373 GCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCG 18432 |||||||||||||| | |||||||| || ||||||| || || || || || || | Sbjct 1580 GCCGACTACACCTATCTTGCCAAGTATGGTGTCAAGGCTTCTTCTGGTGGTGGTCGTGCT 1639 Query 18433 TCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 || || || ||||| || || || || || || ||| |||| ||||||| Sbjct 1640 TCCGCACGTGAGACTATCGGACGAGTTGCGGCTGGTGCGATCGCGGAGAAAT 1691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107075271611943