Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 120 4e-21
seq95 104 3e-16
seq284 87.8 2e-11
>seq6
Length=242052
Score = 120 bits (132), Expect = 4e-21
Identities = 205/290 (71%), Gaps = 13/290 (4%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | ||||| |||| ||| || |||||||| || |||||
Sbjct 183823 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCAGGCATGAGACCTCGCTT 183764
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | |||| || ||||| ||||| || |||||||| || ||
Sbjct 183763 CTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGATACCTTCGACGGCAGCGAA 183704
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355
||||||| ||||| | || | || | ||||| |||||| | ||
Sbjct 183703 AGCGATGAGTCGCTCACCGAA----ACAAGATC--GCTTGTCAGAGATCCATCGAAGAGC 183650
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCT 869414
|||||||||||| || | | | || | ||||| || ||| ||||| ||| || |
Sbjct 183649 CCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTCGAAA-AGGAAGT-TT 183592
Query 869415 TTTCG-GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
||| || | |||||||| ||||||||||| ||||| || ||||||||
Sbjct 183591 CGTCGAGCAGTGTCCTTGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTC 183542
Score = 96.9 bits (106), Expect = 4e-14
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776
|||||||||||||| |||||| | ||| ||||||| |||||| | ||| |||||||
Sbjct 184161 CTCGAAAAAGTTGGCCTTGCCTTGGAGGGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 184102
Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836
| || | ||| ||| || | | | || || ||||||||||||||||| ||
Sbjct 184101 AGAGTTCCAAATCTTCTCGTTACCCAAAGCAACAAGAAGACGGTCGGCGACAAACTCAAT 184042
Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872
||| ||||||||||| ||| ||||| ||||| ||
Sbjct 184041 GTATTGGCACATGAGCTTGGCATTCATACCGATAAG 184006
>seq95
Length=57217
Score = 104 bits (114), Expect = 3e-16
Identities = 174/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
||||| ||||| || || ||| ||| | | | |||||||| || | || ||||| ||
Sbjct 50786 TGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATACCGTTAGAG 50727
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
| |||||||| || || | ||||| ||| || || | ||||| | || ||
Sbjct 50726 TAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 50667
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || || || | ||||||||| | || || ||||| || |||||||| || ||
Sbjct 50666 ATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATCA 50607
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| || || |||||||| | ||||||||||| || || | || || | | || |||
Sbjct 50606 ATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGCCGGGGAGTACCG 50547
Query 1630306 GCGTTGAAGAGC 1630317
|| ||||| |||
Sbjct 50546 GCATTGAAAAGC 50535
>seq284
Length=10241
Score = 87.8 bits (96), Expect = 2e-11
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 18254 TCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCA 18313
||||||| ||||| ||| |||| | || || || | || ||||||| |||| ||
Sbjct 1461 TCCAGTCTGGCACCGAGCACGGTGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACA 1520
Query 18314 ACCGCGACCAGCGGCCCGTCGACTATTCCGACA-TGTGCAAGGTGCCGCGGCCCTCACAC 18372
|| ||||| || || |||||| |||| | || | | || || || || ||
Sbjct 1521 ACAAGGACCAACGACCTCACGACTACGCCGAGACTGATCTTTATCCC-CGACCTTCCCAT 1579
Query 18373 GCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCG 18432
|||||||||||||| | |||||||| || ||||||| || || || || || || |
Sbjct 1580 GCCGACTACACCTATCTTGCCAAGTATGGTGTCAAGGCTTCTTCTGGTGGTGGTCGTGCT 1639
Query 18433 TCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484
|| || || ||||| || || || || || || ||| |||| |||||||
Sbjct 1640 TCCGCACGTGAGACTATCGGACGAGTTGCGGCTGGTGCGATCGCGGAGAAAT 1691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107075271611943
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |