Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq95 93.3 4e-14 >seq6 Length=242052 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| ||||| || || || ||||| || || | Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| ||||| Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 168890 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || ||||| || |||||| | | | || ||||| ||| Sbjct 168889 CAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAAC 168830 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 168829 ATCCAGAAGGAGTCAACTCTTCAC 168806 Score = 100 bits (110), Expect = 3e-16 Identities = 135/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || ||||| || ||||| || || || ||| | | ||| ||| | || | || || Sbjct 168701 CTTACGGGTAAGACAATTACTCTTGAGGTCGAATCTAGCGATACAATCGACAATGTCAAG 168642 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||||||||| ||||| || || |||||||| ||||| | || |||||||| Sbjct 168641 GCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTGCCGGA 168582 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || || || |||||| | | | | || || || ||||||||||| || || || || Sbjct 168581 AAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCACTCTT 168522 Query 24905 CA-CTTG 24910 || |||| Sbjct 168521 CATCTTG 168515 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || || |||||||| ||||| || |||||||| || | Sbjct 169801 ACCATGCAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCT 169742 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||| ||||| || || || ||||| || Sbjct 169741 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGAC 169682 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || ||||||||||| || || ||||| || ||| Sbjct 169681 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGAT 169643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || |||||||| || || || || | | Sbjct 169291 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCT 169232 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || ||||| || ||||| ||||| Sbjct 169231 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAG 169172 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||| |||||||||||||| || ||| |||| ||| Sbjct 169171 CAACGATTGATCTTTGCCGGAAAGCAGTTGGAAGAT 169136 >seq95 Length=57217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 191/279 (68%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||| | ||||| || | || ||| ||| ||||| |||| | ||| | |||| Sbjct 51048 CTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACA 50989 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || | |||||||| || | ||| | || | | | ||| ||| ||||||| ||||| Sbjct 50988 CTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATC 50929 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCT--TCCGAACCCATGTTA 139479 || ||||| | ||| | | | ||| || || || || || ||| ||| ||| | Sbjct 50928 GGGGATCCAGAGGGCGTAGAAAAGATCACGAGC--TCGTACCTCCTCCTTACC-ATGGTT 50872 Query 139480 CGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 | | | | || || ||||||||| || ||||||||||| || || ||||||||||| | Sbjct 50871 CTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAA 50812 Query 139539 TGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCG 139574 || || || ||||||||||| || |||| ||| Sbjct 50811 GGCACCAGGACGCTTGTTGCCACCTTGGTCAACGTATCG 50773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893219122120