Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 2e-18
seq95 93.3 4e-14
>seq6
Length=242052
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || ||||| ||||| || || || ||||| || || |
Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || ||||| |||||
Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 168890
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||| ||||||||||| || ||||| || |||||| | | | || ||||| |||
Sbjct 168889 CAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAAC 168830
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
|| || ||||| || || || |||
Sbjct 168829 ATCCAGAAGGAGTCAACTCTTCAC 168806
Score = 100 bits (110), Expect = 3e-16
Identities = 135/187 (72%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784
|| || ||||| || ||||| || || || ||| | | ||| ||| | || | || ||
Sbjct 168701 CTTACGGGTAAGACAATTACTCTTGAGGTCGAATCTAGCGATACAATCGACAATGTCAAG 168642
Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844
|||||||||||||| ||||| || || |||||||| ||||| | || ||||||||
Sbjct 168641 GCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTGCCGGA 168582
Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904
|| || || |||||| | | | | || || || ||||||||||| || || || ||
Sbjct 168581 AAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCACTCTT 168522
Query 24905 CA-CTTG 24910
|| ||||
Sbjct 168521 CATCTTG 168515
Score = 98.7 bits (108), Expect = 9e-16
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||| || | || || || |||||||| ||||| || |||||||| || |
Sbjct 169801 ACCATGCAGATTTTCGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTGGAGTCT 169742
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | || | || || |||||||| ||||| || || || ||||| ||
Sbjct 169741 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGAC 169682
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| || || ||||||||||| || || ||||| || |||
Sbjct 169681 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGAT 169643
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || ||||| || |||||||| || || || || | |
Sbjct 169291 ATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCT 169232
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || || || ||||| || ||||| |||||
Sbjct 169231 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAG 169172
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
||||| |||||||||||||| || ||| |||| |||
Sbjct 169171 CAACGATTGATCTTTGCCGGAAAGCAGTTGGAAGAT 169136
>seq95
Length=57217
Score = 93.3 bits (102), Expect = 4e-14
Identities = 191/279 (68%), Gaps = 9/279 (3%)
Strand=Plus/Minus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
|||||| | ||||| || | || ||| ||| ||||| |||| | ||| | ||||
Sbjct 51048 CTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACA 50989
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
|| | |||||||| || | ||| | || | | | ||| ||| ||||||| |||||
Sbjct 50988 CTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATC 50929
Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCT--TCCGAACCCATGTTA 139479
|| ||||| | ||| | | | ||| || || || || || ||| ||| ||| |
Sbjct 50928 GGGGATCCAGAGGGCGTAGAAAAGATCACGAGC--TCGTACCTCCTCCTTACC-ATGGTT 50872
Query 139480 CGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538
| | | | || || ||||||||| || ||||||||||| || || ||||||||||| |
Sbjct 50871 CTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAA 50812
Query 139539 TGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCG 139574
|| || || ||||||||||| || |||| |||
Sbjct 50811 GGCACCAGGACGCTTGTTGCCACCTTGGTCAACGTATCG 50773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449893219122120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |