Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 123 4e-22 seq95 98.7 2e-14 >seq6 Length=242052 Score = 123 bits (136), Expect = 4e-22 Identities = 216/306 (71%), Gaps = 15/306 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | ||||| ||| ||| || |||||||| || ||||| Sbjct 183823 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCAGGCATGAGACCTCGCTT 183764 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| |||| || ||||| ||||| || |||||||| || || Sbjct 183763 CTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGATACCTTCGACGGCAGCGAA 183704 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT---TGATCCACTTCATCGC 794516 ||| ||| ||||| | ||| || | | | |||| |||||| | || Sbjct 183703 AGCGATGAGTCGCTCACCGAAA-----CAAGATCGC-TTGTCAGAGATCCATCGAAGAGC 183650 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCT 794575 ||| || ||||| || | | | || | ||||| || ||| ||||| ||| || | Sbjct 183649 CCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTCGAAA-AGGAAGT--T 183593 Query 794576 TC-TCGA-CCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 || |||| | | |||||||| |||||||||||| ||||| ||||||||||| | ||| || Sbjct 183592 TCGTCGAGCAGTGTCCTTGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTCGGCGTGTAT 183533 Query 794634 GTTTTC 794639 ||| || Sbjct 183532 GTTCTC 183527 Score = 102 bits (112), Expect = 1e-15 Identities = 129/172 (75%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||||||||||| |||||| | ||| ||||||| |||||| | ||| ||||||| Sbjct 184161 CTCGAAAAAGTTGGCCTTGCCTTGGAGGGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 184102 Query 793985 CGTCAGGT--AGTGCTTCTCGC-ACCCGA-GCGACGCAAGCAGGCGGTCGGCGACGAATT 794040 | || | | ||||||| |||| | || || ||| || ||||||||||| || | Sbjct 184101 AG--AGTTCCAAATCTTCTCGTTACCCAAAGCAAC--AAGAAGACGGTCGGCGACAAACT 184046 Query 794041 CAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAG 794092 ||||||| ||||||||||| ||| ||||| ||||| || | ||||| || Sbjct 184045 CAATGTATTGGCACATGAGCTTGGCATTCATACCGATAAGAGAGACGGGGAG 183994 >seq95 Length=57217 Score = 98.7 bits (108), Expect = 2e-14 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || || || || ||| ||| | | | |||||||| || | | ||||| || Sbjct 50786 TGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATACCGTTAGAG 50727 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||| || || | ||||| |||| || || | ||||| | || || Sbjct 50726 TAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 50667 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || | ||||||||| | || || | || || || |||||||| || || Sbjct 50666 ATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATCA 50607 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || || || |||||||| | | |||||||| || || | || || || | || ||| Sbjct 50606 ATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGCCGGGGAGTACCG 50547 Query 2073781 GCATTGAAGAGC 2073792 |||||||| ||| Sbjct 50546 GCATTGAAAAGC 50535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916163534216981