Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 4e-22
seq95 98.7 2e-14
>seq6
Length=242052
Score = 123 bits (136), Expect = 4e-22
Identities = 216/306 (71%), Gaps = 15/306 (5%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | ||||| ||| ||| || |||||||| || |||||
Sbjct 183823 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACCAGGCATGAGACCTCGCTT 183764
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| |||| || ||||| ||||| || |||||||| || ||
Sbjct 183763 CTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGATACCTTCGACGGCAGCGAA 183704
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT---TGATCCACTTCATCGC 794516
||| ||| ||||| | ||| || | | | |||| |||||| | ||
Sbjct 183703 AGCGATGAGTCGCTCACCGAAA-----CAAGATCGC-TTGTCAGAGATCCATCGAAGAGC 183650
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCCT 794575
||| || ||||| || | | | || | ||||| || ||| ||||| ||| || |
Sbjct 183649 CCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTCGAAA-AGGAAGT--T 183593
Query 794576 TC-TCGA-CCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633
|| |||| | | |||||||| |||||||||||| ||||| ||||||||||| | ||| ||
Sbjct 183592 TCGTCGAGCAGTGTCCTTGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTCGGCGTGTAT 183533
Query 794634 GTTTTC 794639
||| ||
Sbjct 183532 GTTCTC 183527
Score = 102 bits (112), Expect = 1e-15
Identities = 129/172 (75%), Gaps = 8/172 (5%)
Strand=Plus/Minus
Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984
|||||||||||||| |||||| | ||| ||||||| |||||| | ||| |||||||
Sbjct 184161 CTCGAAAAAGTTGGCCTTGCCTTGGAGGGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 184102
Query 793985 CGTCAGGT--AGTGCTTCTCGC-ACCCGA-GCGACGCAAGCAGGCGGTCGGCGACGAATT 794040
| || | | ||||||| |||| | || || ||| || ||||||||||| || |
Sbjct 184101 AG--AGTTCCAAATCTTCTCGTTACCCAAAGCAAC--AAGAAGACGGTCGGCGACAAACT 184046
Query 794041 CAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAG 794092
||||||| ||||||||||| ||| ||||| ||||| || | ||||| ||
Sbjct 184045 CAATGTATTGGCACATGAGCTTGGCATTCATACCGATAAGAGAGACGGGGAG 183994
>seq95
Length=57217
Score = 98.7 bits (108), Expect = 2e-14
Identities = 173/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
||||| || || || || ||| ||| | | | |||||||| || | | ||||| ||
Sbjct 50786 TGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAATGATACCGTTAGAG 50727
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
| |||||||| || || | ||||| |||| || || | ||||| | || ||
Sbjct 50726 TAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 50667
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
|| || || || | ||||||||| | || || | || || || |||||||| || ||
Sbjct 50666 ATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTATCGTAGATACCATCA 50607
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
|| || || |||||||| | | |||||||| || || | || || || | || |||
Sbjct 50606 ATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGGGGCCGGGGAGTACCG 50547
Query 2073781 GCATTGAAGAGC 2073792
|||||||| |||
Sbjct 50546 GCATTGAAAAGC 50535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916163534216981
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |