Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 >seq6 Length=242052 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||| ||||| || || || || | || |||| Sbjct 168798 AGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCC 168857 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||||| ||||||||| || | || | ||||||||||| Sbjct 168858 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCC 168917 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| ||| || |||||| |||| || ||||| Sbjct 168918 TGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTT 168977 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || || |||||||| Sbjct 168978 TTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | |||| |||||| || ||||| ||||| || || | || | || Sbjct 169307 CAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTC 169366 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||||||||| || | ||| |||||||| | || | || |||||||| Sbjct 169367 TTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTC 169426 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| ||| || ||| || |||| || | Sbjct 169427 CTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGA 169482 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || ||||| || || |||||||| Sbjct 169483 TGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||| || |||||||| ||||| || ||| | || |||| Sbjct 168511 AGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGACCATCC 168570 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||||||||| || || ||||||||||| || | || | || |||||||| Sbjct 168571 TCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGGATACCTTCCTTGTC 168629 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| |||| ||||||||||| ||||||| ||||||||| || | || | || |||| Sbjct 169135 CATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGATCAGGAGGAATACCTTCCT 169194 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || | || || ||||| | |||| ||| | |||||| |||| || | Sbjct 169195 TATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAAGACTCGACCTCAAGAGTAA 169254 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| || |||||||| || || |||||||| Sbjct 169255 TAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689707852201