Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq163 98.7 7e-15 seq21 95.1 9e-14 >seq163 Length=95501 Score = 98.7 bits (108), Expect = 7e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 432279 AGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATG 432338 || || | ||| |||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 87075 AGGTTAAAAGGAAAAGAAGGTCGTATGAGAGGTAATTTGATGGGAAAGCGTGTCGATTTT 87134 Query 432339 TCTGCACGTACAGTTATTACTTCTGATCCTAA 432370 || || || || ||||||||| |||||| || Sbjct 87135 TCAGCGCGAACGGTTATTACTGGTGATCCCAA 87166 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| | ||||| | |||| |||||| |||||| | ||| |||| ||| | || ||| Sbjct 88844 GAATTCTGGTTCCACGCTATGGGTGGTCGAGAAGGTTTGATTGATACCGCTGTCAAGACT 88903 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 || || ||||||||||| ||||||| | | |||||| | | || || | || | Sbjct 88904 GCCGAGACTGGTTATATCCAAAGAAGATTGGTCAAGGCGATGGAGGACTTGAAGGTTGCT 88963 Query 435253 TATGATGGTACAGTGAGAAAT 435273 ||||| ||||| ||||||||| Sbjct 88964 TATGACGGTACTGTGAGAAAT 88984 >seq21 Length=50189 Score = 95.1 bits (104), Expect = 9e-14 Identities = 139/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || || || || ||| |||| || |||||||| || ||| | ||||| | || |||||| Sbjct 6648 AACTGCACTCTCATTCTGACGGAAGGAGATTCTGCCAAAGCTCTCGCTGTTTCCGGCCTT 6707 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | ||| | ||| | ||||| |||||||| || ||||| |||||| | || ||| Sbjct 6708 GCAGTTGTCGGACGCGATGAATATGGCGTTTTCCCTCTCAGAGGTAAACTTCTCAACGTT 6767 Query 400414 AGGGATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCA-ATCaaaaaaaT 400472 | || ||| ||| | | |||| | |||||||||| | ||||| ||||| | || Sbjct 6768 CGCGAAGCTGGTCACGACCAGATTGTAAAAAATGAGGAAA-TCCAGCATATCAAGCAGAT 6826 Query 400473 TGTTGGACTTGAA 400485 | |||| ||||| Sbjct 6827 T-TTGGGTTTGAA 6838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740592154392054