Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq6 147 4e-30
>seq6
Length=242052
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | ||| ||||| || || ||||| || || ||||| |
Sbjct 168781 TACCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGG 168840
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | ||| || || |||||||| ||||||||||| | || ||| ||||| ||||
Sbjct 168841 AAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGAG 168900
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || |||||||| || || ||||| || ||||| ||| | || |
Sbjct 168901 GGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCAGAGGACTCGA 168960
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || || ||||| || | ||||| || || ||||||||
Sbjct 168961 CTTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169009
Score = 129 bits (142), Expect = 1e-24
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
|||||||| | | ||| ||| ||||| | || ||||| |||||||| | || ||| |||
Sbjct 169116 TAATCAGACAAAGTTCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAATCGTTGCTGA 169175
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|| ||||| || ||||||||||| |||||||| || || ||||| || ||||| ||| |
Sbjct 169176 TCAGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCAGAA 169235
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || || || | ||| || ||||| || || | ||||| || || ||||||||
Sbjct 169236 GACTCGACCTCAAGAGTAATAGTCTTTCCGGTAAGGGTCTTGACGAAAATCTGCAT 169291
Score = 93.3 bits (102), Expect = 8e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
|| || || ||| | || || ||||| || || || ||||||||||| | || || ||
Sbjct 169623 TAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 169682
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|| ||||| || || ||||| || || ||||| | || ||||| || || || || |
Sbjct 169683 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAA 169742
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || ||||| | ||| || ||||| || || | ||||| || || ||||||||
Sbjct 169743 GACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981817400444081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |