Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq303 100 3e-16 seq152 87.8 2e-12 >seq6 Length=242052 Score = 118 bits (130), Expect = 1e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | ||||||||| || || || ||||| ||| | || || || || || || Sbjct 169316 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCG--TCTTCAAGT 169373 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| | ||||||||||| ||||| || ||||||||||| ||| Sbjct 169374 TGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGAATC 169433 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | || ||| || || | |||| |||||||||| Sbjct 169434 TTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTTGCCG 169493 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||||||||| Sbjct 169494 GTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | || ||| | ||||| || || || || Sbjct 168813 GTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCA-TCCTCAAGTTGTTTACC 168871 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||| || |||||||| || |||||||| ||||| ||| Sbjct 168872 AGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTT 168931 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| | || ||| || || | |||| |||||||||||| ||||| Sbjct 168932 GACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGT 168991 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 168992 CTTGACGAAAATCTGCAT 169009 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || | || | ||||||||||| |||||||| || |||||| Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||||| | |||||| |||| |||| Sbjct 169704 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTGATA 169763 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || || ||||| || || || |||||||||||||||| Sbjct 169764 GTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATGG 169800 >seq303 Length=31351 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 ||||||||||| ||||||||||| |||| || ||||||||| ||||| ||||| ||| Sbjct 15417 GGCTTCCACGTCCACGAGTTTGGAGACAACACCAACGGCTGTACCTCTGCCGGTCCCCAC 15476 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 ||||||||| |||| || ||||||| || ||| | | | | | ||||| |||||| Sbjct 15477 TTCAACCCCCACGGCAAGAACCACGGTGCCCCCTCTGACTCTGAGAGGCACGTTGGTGAC 15536 Query 116596 CTGGG 116600 || || Sbjct 15537 CTCGG 15541 >seq152 Length=36388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | || | ||||||||||| || ||||| || ||||| Sbjct 23076 GTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATACCCTCCTT 23135 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| || ||| || || | ||||| Sbjct 23136 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 23195 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 23196 GGTCTTTCCGGTAAGA 23211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416092689960