Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq303 100 3e-16
seq152 87.8 2e-12
>seq6
Length=242052
Score = 118 bits (130), Expect = 1e-21
Identities = 151/206 (73%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514
||| | ||||||||| || || || ||||| ||| | || || || || || ||
Sbjct 169316 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCG--TCTTCAAGT 169373
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| |||| | ||||||||||| ||||| || ||||||||||| |||
Sbjct 169374 TGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGAATC 169433
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | ||||| | || ||| || || | |||| ||||||||||
Sbjct 169434 TTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTTGCCG 169493
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || ||||||||||||||
Sbjct 169494 GTAAGAGTCTTGACGAAAATCTGCAT 169519
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||||||| | || ||| | ||||| || || || ||
Sbjct 168813 GTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCA-TCCTCAAGTTGTTTACC 168871
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | || ||||| || |||||||| || |||||||| ||||| |||
Sbjct 168872 AGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTT 168931
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | |||||| | || ||| || || | |||| |||||||||||| |||||
Sbjct 168932 GACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGT 168991
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 168992 CTTGACGAAAATCTGCAT 169009
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || |||||||| || || | || | ||||||||||| |||||||| || ||||||
Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||||| | |||||| |||| ||||
Sbjct 169704 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTGATA 169763
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662
|| || ||||| || || || ||||||||||||||||
Sbjct 169764 GTCTTACCGGTGAGGGTCTTGACGAAAATCTGCATGG 169800
>seq303
Length=31351
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535
||||||||||| ||||||||||| |||| || ||||||||| ||||| ||||| |||
Sbjct 15417 GGCTTCCACGTCCACGAGTTTGGAGACAACACCAACGGCTGTACCTCTGCCGGTCCCCAC 15476
Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595
||||||||| |||| || ||||||| || ||| | | | | | ||||| ||||||
Sbjct 15477 TTCAACCCCCACGGCAAGAACCACGGTGCCCCCTCTGACTCTGAGAGGCACGTTGGTGAC 15536
Query 116596 CTGGG 116600
|| ||
Sbjct 15537 CTCGG 15541
>seq152
Length=36388
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| |||||||| || ||| | || | ||||||||||| || ||||| || |||||
Sbjct 23076 GTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATACCCTCCTT 23135
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||||| || ||| || || | |||||
Sbjct 23136 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 23195
Query 133625 GGTTTTGCCGGTCAGA 133640
||| || ||||| |||
Sbjct 23196 GGTCTTTCCGGTAAGA 23211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483416092689960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |