Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq95 122 2e-22 seq258 87.8 4e-12 >seq95 Length=57217 Score = 122 bits (134), Expect = 2e-22 Identities = 407/633 (64%), Gaps = 3/633 (0%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || |||||||| ||| || || |||||||| ||||| ||||| || ||| |||| || Sbjct 50572 TCATGCTTTCTCGTAGCCATGAAGGATGATTCCATTGATGGTATCTACGATACTCTCAAG 50631 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 ||||| || || || | | |||| || |||||| ||||| |||| |||| || Sbjct 50632 ACTTGTGCTCAGATCTCCAAGACCGCTGGTGGTATTGGTCTTCACATTCACAATATCCGT 50691 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 | || || | | || || | || ||| || | || | |||| ||| | Sbjct 50692 GCGAAGGGCTCCTACATTGCCGGTACCAACGGTTACTCTAACGGTATCATTCCTATGCTC 50751 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCA 110756 ||| | ||| |||||| ||| || | |||||||| || | | ||| | Sbjct 50752 CGAGCTTATGACGCCACTGCTCGATACGTTGACCAAGGTGGCAACAAGCGTCCTGGTGCC 50811 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || || |||||||| || || ||||| | ||| ||||||| ||| | || | | || Sbjct 50812 TTCGCCATCTATCTTGAGCCCTGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAG 50871 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 || || || || || | |||| |||||| | || || || | ||||| | ||| Sbjct 50872 AACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGAT 50931 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 | |||||||| ||||| || |||| ||| | ||||||||||| | | | Sbjct 50932 CTTTTCATGAAGCGTGTCGAATCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGT 50991 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 ||||| || | || ||||| ||| |||| ||||| | |||||||| | || || | Sbjct 50992 CCTGGGCTTGCCGACGTATACGGAGAAGAATTTGAGAAGCTTTACGAGAGCTACGAGAGG 51051 Query 110997 GAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCA 111056 | || ||| | ||| || ||| || | ||||||||| |||||||| | Sbjct 51052 CAGGGTAAGGGGAGAAAAACTATCAAAGCCCAGAAGCTTTGGTTCGCTATCCTTGAGGCT 51111 Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAAT 111116 || || ||||| ||||| || | ||||| ||| || ||| || || Sbjct 51112 CAGACAGAGACTGGTGTCCCTTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAAC 51171 Query 111117 CAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 |||| | | | || || |||||||| |||||| Sbjct 51172 CAAAAGCACCTTGGTACCATTAAGTCCAGTAAT 51204 >seq258 Length=65905 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 || || || || |||||||| || || ||||| || |||||||| || | || |||| Sbjct 13759 ACTAGGCTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCT 13700 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||| ||| | |||||| | ||||||||||||||||| |||| || || | || ||| Sbjct 13699 ATCTTCTGGTTGAAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGATC 13640 Query 131975 TCGAGAGATGA 131985 || ||||| Sbjct 13639 AGTAGGGATGA 13629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800954495619