Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq95 122 2e-22
seq258 87.8 4e-12
>seq95
Length=57217
Score = 122 bits (134), Expect = 2e-22
Identities = 407/633 (64%), Gaps = 3/633 (0%)
Strand=Plus/Plus
Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579
|| |||||||| ||| || || |||||||| ||||| ||||| || ||| |||| ||
Sbjct 50572 TCATGCTTTCTCGTAGCCATGAAGGATGATTCCATTGATGGTATCTACGATACTCTCAAG 50631
Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639
||||| || || || | | |||| || |||||| ||||| |||| |||| ||
Sbjct 50632 ACTTGTGCTCAGATCTCCAAGACCGCTGGTGGTATTGGTCTTCACATTCACAATATCCGT 50691
Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699
| || || | | || || | || ||| || | || | |||| ||| |
Sbjct 50692 GCGAAGGGCTCCTACATTGCCGGTACCAACGGTTACTCTAACGGTATCATTCCTATGCTC 50751
Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCA 110756
||| | ||| |||||| ||| || | |||||||| || | | ||| |
Sbjct 50752 CGAGCTTATGACGCCACTGCTCGATACGTTGACCAAGGTGGCAACAAGCGTCCTGGTGCC 50811
Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816
|| || |||||||| || || ||||| | ||| ||||||| ||| | || | | ||
Sbjct 50812 TTCGCCATCTATCTTGAGCCCTGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAG 50871
Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876
|| || || || || | |||| |||||| | || || || | ||||| | |||
Sbjct 50872 AACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGAT 50931
Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936
| |||||||| ||||| || |||| ||| | ||||||||||| | | |
Sbjct 50932 CTTTTCATGAAGCGTGTCGAATCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGT 50991
Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996
||||| || | || ||||| ||| |||| ||||| | |||||||| | || || |
Sbjct 50992 CCTGGGCTTGCCGACGTATACGGAGAAGAATTTGAGAAGCTTTACGAGAGCTACGAGAGG 51051
Query 110997 GAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCA 111056
| || ||| | ||| || ||| || | ||||||||| |||||||| |
Sbjct 51052 CAGGGTAAGGGGAGAAAAACTATCAAAGCCCAGAAGCTTTGGTTCGCTATCCTTGAGGCT 51111
Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAAT 111116
|| || ||||| ||||| || | ||||| ||| || ||| || ||
Sbjct 51112 CAGACAGAGACTGGTGTCCCTTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAAC 51171
Query 111117 CAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149
|||| | | | || || |||||||| ||||||
Sbjct 51172 CAAAAGCACCTTGGTACCATTAAGTCCAGTAAT 51204
>seq258
Length=65905
Score = 87.8 bits (96), Expect = 4e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
|| || || || |||||||| || || ||||| || |||||||| || | || ||||
Sbjct 13759 ACTAGGCTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCT 13700
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||| ||| | |||||| | ||||||||||||||||| |||| || || | || |||
Sbjct 13699 ATCTTCTGGTTGAAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGATC 13640
Query 131975 TCGAGAGATGA 131985
|| |||||
Sbjct 13639 AGTAGGGATGA 13629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186800954495619
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |