Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 2e-15
>seq6
Length=242052
Score = 96.9 bits (106), Expect = 2e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | || | ||| |||||| ||||||||| |||||||| |||||
Sbjct 168495 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGA 168554
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | ||| |||||||||||||| | || |||||||| | ||
Sbjct 168555 AAGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGG 168614
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || | | |||| ||| | || ||||| ||||| |
Sbjct 168615 GATACCTTCCTTGTCTTGGATCTT-GGCCTTGACATTGTCGATTGTATCGCTAGATTCGA 168673
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| |||| || || || ||||| ||
Sbjct 168674 CCTCAAGAGTAATTGTCTTACCCGT 168698
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || |||||||||||||| || || || | || || | ||||
Sbjct 168807 TGAAGAGTTGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGT 168866
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| || ||||| ||||| || |||||||| | || | ||| || ||||| ||| |||
Sbjct 168867 TTACCAGCAAAGATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTC 168926
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
| | |||| ||| | ||||| || || || |||| ||||| ||||| || ||
Sbjct 168927 -GCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGT 168985
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
| || || || || |||||||||
Sbjct 168986 AAGAGTCTTGACGAAAATCTGCATA 169010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328700879263680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |