Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 8e-15
>seq6
Length=242052
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || || ||||| |||||| | ||||| || ||||||
Sbjct 169006 CAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCTGAC 168947
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || || || || |||
Sbjct 168946 ACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAA 168887
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||| || || || || | || ||||| | ||| | ||||||||||| ||
Sbjct 168886 CGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAACATC 168827
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||||||||||||
Sbjct 168826 CAGAAGGAGTCAACTCTTCACCTTGT 168801
Score = 95.1 bits (104), Expect = 3e-14
Identities = 126/175 (72%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || ||||| || || ||| | || || || |||||||
Sbjct 169288 CAGATTTTCGTCAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTCGAGTCTTCTGAC 169229
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || ||||| ||| || || |||
Sbjct 169228 ACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAA 169169
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347
|| | ||||| ||||||||||||||||||||||| | |||||| | |||||||
Sbjct 169168 CGATTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGAACTTTGTCTGATTACA 169114
Score = 93.3 bits (102), Expect = 1e-13
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || || ||||| |||||| | || || || ||||||
Sbjct 169516 CAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCTGAC 169457
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || ||||| ||| || ||| ||
Sbjct 169456 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAGCAG 169397
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | || |||||||||||||| | ||||| || | ||| | |||| |||||| ||
Sbjct 169396 CGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAACATC 169337
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| || ||||| || || || || || ||| | || |||
Sbjct 169336 CAAAAGGAGTCCACCCTCCATCTCGTCTTGCGTCTCCGA 169298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181809004320459
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |