Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 9e-16
>seq6
Length=242052
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||| |||||||| |||| | ||||| |||| || || ||||| || || ||
Sbjct 169328 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAA 169387
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| || ||||||||||| | ||||| | ||||||||| ||||| ||| | | |
Sbjct 169388 AATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATT 169447
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || || ||||| | ||||| ||||| || || | ||| || ||
Sbjct 169448 GTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGAC 169507
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 169508 GAAAATCTGCAT 169519
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| || ||||||||||| ||||| ||||| ||||||||||| | ||| | | |||||||
Sbjct 169644 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 169703
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
||| |||||| ||| | | | | | |||||| || ||||| || | |||||
Sbjct 169704 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCGAGAGTGATA 169763
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||| || | || || || || ||||||||
Sbjct 169764 GTCTTACCGGTGAGGGTCTTGACGAAAATCTGCAT 169798
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||||| | || || | || || || || ||||| |||||
Sbjct 168818 CTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 168877
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| || ||||| || | ||| | | |||||||||| ||||| ||| | | |
Sbjct 168878 GATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 168937
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || || || | ||||| ||||| || || | ||| || ||
Sbjct 168938 GTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGAC 168997
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 168998 GAAAATCTGCAT 169009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450789210397320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |