Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq39 113 4e-20 seq258 105 5e-18 >seq39 Length=93810 Score = 113 bits (124), Expect = 4e-20 Identities = 244/359 (68%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| |||| || || || ||||| || || |||| ||| ||||| ||||| || Sbjct 47589 CCCAAGGTTGTTAACGGACCGGAAATTTTGAACAAATTTGTCGGTCAGAGTGAAGAGAAC 47648 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA-AGTTC 19547 | || |||| || ||||| ||| |||| || ||| | |||||| | ||| Sbjct 47649 ATCAGAAAACTGTTCGCGGACGCCGAAAAAGAGCAGAAA-GAGAAGGGCGATGAGAGTGG 47707 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605 ||| ||||| || ||| | ||||| ||||||| || ||||| || | || || | Sbjct 47708 TTTACACATCATCATATTTGATGAGCTGGACGCCATTTGTAAACAGCGTGGCTCCACTAA 47767 Query 19606 ----GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | | ||| || |||| | |||||||||||||| || | ||| | |||||||| Sbjct 47768 CAGCGGTACTGGCGTCGGTGACTCCGTTGTCAATCAACTTCTCGCCAAAATGGACGGTGT 47827 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA--C 19719 |||||||||| ||| | | ||||||| ||||| || | |||| | || || Sbjct 47828 CGACCAACTGAACAATGTCCTTATTATTGGTATGACCAACCGTATGGACATGATTGATGA 47887 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 ||| |||| || || || || || |||||| | | ||||||||| ||| || || || Sbjct 47888 AGC-CCTTCTT-CGTCCGGGACGATTGGAAGTTCATATCGAAATTTCCTTGCCGGACGA 47944 >seq258 Length=65905 Score = 105 bits (116), Expect = 5e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 44132 CTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTT 44191 || || || |||||| |||||||||||||||||||| || || ||||| || || || Sbjct 13753 CTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCTATCTTC 13694 Query 44192 TGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251 ||||| ||||| | || ||||||||||| |||| || ||||| ||||| || ||| | Sbjct 13693 TGGTTGAAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGATCAGTAGG 13634 Query 44252 GATGAAGG 44259 ||||| || Sbjct 13633 GATGAGGG 13626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452226527895