Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq39 113 4e-20
seq258 105 5e-18
>seq39
Length=93810
Score = 113 bits (124), Expect = 4e-20
Identities = 244/359 (68%), Gaps = 12/359 (3%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| |||| || || || ||||| || || |||| ||| ||||| ||||| ||
Sbjct 47589 CCCAAGGTTGTTAACGGACCGGAAATTTTGAACAAATTTGTCGGTCAGAGTGAAGAGAAC 47648
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA-AGTTC 19547
| || |||| || ||||| ||| |||| || ||| | |||||| | |||
Sbjct 47649 ATCAGAAAACTGTTCGCGGACGCCGAAAAAGAGCAGAAA-GAGAAGGGCGATGAGAGTGG 47707
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605
||| ||||| || ||| | ||||| ||||||| || ||||| || | || || |
Sbjct 47708 TTTACACATCATCATATTTGATGAGCTGGACGCCATTTGTAAACAGCGTGGCTCCACTAA 47767
Query 19606 ----GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661
| | ||| || |||| | |||||||||||||| || | ||| | ||||||||
Sbjct 47768 CAGCGGTACTGGCGTCGGTGACTCCGTTGTCAATCAACTTCTCGCCAAAATGGACGGTGT 47827
Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA--C 19719
|||||||||| ||| | | ||||||| ||||| || | |||| | || ||
Sbjct 47828 CGACCAACTGAACAATGTCCTTATTATTGGTATGACCAACCGTATGGACATGATTGATGA 47887
Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
||| |||| || || || || || |||||| | | ||||||||| ||| || || ||
Sbjct 47888 AGC-CCTTCTT-CGTCCGGGACGATTGGAAGTTCATATCGAAATTTCCTTGCCGGACGA 47944
>seq258
Length=65905
Score = 105 bits (116), Expect = 5e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 44132 CTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTT 44191
|| || || |||||| |||||||||||||||||||| || || ||||| || || ||
Sbjct 13753 CTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCCTTTGCTGCTATCTTC 13694
Query 44192 TGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251
||||| ||||| | || ||||||||||| |||| || ||||| ||||| || ||| |
Sbjct 13693 TGGTTGAAGAAGAGGGGATTGATGCCTGGACTGACATTCTCAAACGAGTTGATCAGTAGG 13634
Query 44252 GATGAAGG 44259
||||| ||
Sbjct 13633 GATGAGGG 13626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397452226527895
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |