Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq95 187 3e-42
seq21 114 2e-20
seq110 95.1 2e-14
seq6 93.3 5e-14
>seq95
Length=57217
Score = 187 bits (206), Expect = 3e-42
Identities = 719/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Minus
Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927
||||||||||| ||||||| | |||| || |||||| || || | | |||||||
Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581
Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987
||| || | ||||| | || || ||||| || | ||||| || ||||| || |
Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521
Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042
|||| | ||| | |||| |||| ||| || || || |||| || | || |
Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGA 51461
Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102
|| | || ||||||||||| ||||| | |||| ||||| || ||||| || ||
Sbjct 51460 AAG-----CGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGA 51406
Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159
|| || || |||| || ||||| | || | | |||||| || || || ||
Sbjct 51405 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTT 51349
Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219
|| ||||| ||| || || ||||| || || | | || | |||| || ||
Sbjct 51348 GGCAACAACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATC 51289
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
|| | ||||| || | || || | || || || || |||||| | |
Sbjct 51288 CACGAAGGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGA 51229
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACT---CTTAATCGTCCCCAAATTCTTTTG 111336
||||| | |||||| ||||| | || ||| |||||| || || | | ||||||
Sbjct 51228 ATACTCCATAATTTCAGTACAGAGATT---ACTGGACTTAATGGTACCAAGGTGCTTTTG 51172
Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396
||| ||| |||| |||||||| || ||||| || || ||||| |||||
Sbjct 51171 GTTGGACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTG 51112
Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CC 111453
| | || ||||| ||||| | || | |||| | | | || ||| | ||
Sbjct 51111 AGCCTCAAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGTTT--TTCTCCCCTTACC 51055
Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513
|| | |||||| | ||| || ||||| || || || |||||| || ||
Sbjct 51054 CTGCCTCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCC 50995
Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573
|| || | ||||| | ||| | ||| | ||| | || || |||||||||||
Sbjct 50994 AGGACACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAA 50935
Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633
||| || || ||||| |||| | || ||||| | | || |||| || | ||| ||
Sbjct 50934 AAGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 50875
Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 50874 GTTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGC 50815
Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747
|| | || ||||| ||| |||| | || || || || ||||||| | |
Sbjct 50814 GAAGGCACC---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATA 50758
Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807
| || ||||| ||||| ||||| | || | ||| || || || ||| ||
Sbjct 50757 AGCTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC 50698
Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867
|| || | | || || ||||| | |||||||| ||||| ||| ||||| || ||
Sbjct 50697 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGC 50638
Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927
||| | | ||||| | |||||||| | || || || ||||| |||| | || ||
Sbjct 50637 ACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAA 50578
Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969
||| |||||||| || | || ||||| |||||||| ||
Sbjct 50577 GCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq21
Length=50189
Score = 114 bits (126), Expect = 2e-20
Identities = 287/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Minus
Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684
||| ||||||||||| || | ||||| | | ||||| || | ||||||||| || |
Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869
Query 181685 GTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGG 181744
||||||||||||| || || ||| | ||||||||||| | ||| || |||
Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809
Query 181745 ATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803
| |||||| | | | ||| ||| ||| |||||||||||||| | | || ||
Sbjct 7808 GTGGAAGATCGCTCTCGTCATCCGTGG-AAGATTTGTGAAGATATAACGAGCAGAAGCAG 7750
Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863
||||||||||||| || || |||||||| ||||| || || | || || || |
Sbjct 7749 CGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATAT 7690
Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCG-CAAGGGACACTTCA 181922
|||| || | ||| | || || | ||||||| || ||| | |||||
Sbjct 7689 TGTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTA-GCTTCA 7631
Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCATTTC 181981
|| || || || || | ||| |||| ||| || ||| ||| ||| || ||||| |||||
Sbjct 7630 CCATGATGATATGCAGTCTTCTCCGAAACGTA-ACCGACAAGCTGAGCGACCTTAATTTC 7572
Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACC 182041
| |||| || | ||| ||| || | | || || | ||| ||| ||||||||
Sbjct 7571 CTTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 7512
Query 182042 ATCCGCCA 182049
|| ||||
Sbjct 7511 GTCGGCCA 7504
>seq110
Length=133707
Score = 95.1 bits (104), Expect = 2e-14
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679
|||||| | ||| ||||| ||||| | ||||| |||||| || || | ||| |
Sbjct 78943 CTTGCCGATCGCGTCAATTTCATCGACGAAGATAATACAGGGGGCGTTCTTCTTAGCGTT 78884
Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739
| | || | || || || | || ||| ||||| |||||||| || || || | |
Sbjct 78883 TGCGAACAAGTCACGCACTCGGGAGGGACCGACACCGACAAACATTTCGACGAACTCGGA 78824
Query 11740 GGCAGAGCACTGGATG-AATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798
||||| || | | | || || ||| | |||||| ||| | || |||||||||||
Sbjct 78823 ACCAGAG-ACAGAAAGGAAAGGCACACCGGCTTCACCGGCGGTAGCCTTGGCGAGGAGGG 78765
Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854
|||| || ||||| || ||| | |||| ||||||||| ||||| |||||||||
Sbjct 78764 TCTTACCGGTACCGGGAGGACCAGAAAGAATGGCGCCTCGAGGGATTTTGGCACCA 78709
>seq6
Length=242052
Score = 93.3 bits (102), Expect = 5e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || |||||||||||| || || || || || || || |||||| |||||
Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | ||| | || | | ||| || || |||||||||||
Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722
Query 122778 ACCCTCCAC 122786
||| || ||
Sbjct 183721 ACCTTCGAC 183713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628025884538400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |