Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq95 187 3e-42 seq21 114 2e-20 seq110 95.1 2e-14 seq6 93.3 5e-14 >seq95 Length=57217 Score = 187 bits (206), Expect = 3e-42 Identities = 719/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 ||||||||||| ||||||| | |||| || |||||| || || | | ||||||| Sbjct 51640 CCCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGG 51581 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| || | ||||| | || || ||||| || | ||||| || ||||| || | Sbjct 51580 TACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGA 51521 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | ||| | |||| |||| ||| || || || |||| || | || | Sbjct 51520 AGATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGA 51461 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || | || ||||||||||| ||||| | |||| ||||| || ||||| || || Sbjct 51460 AAG-----CGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGA 51406 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || |||| || ||||| | || | | |||||| || || || || Sbjct 51405 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTT 51349 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 || ||||| ||| || || ||||| || || | | || | |||| || || Sbjct 51348 GGCAACAACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATC 51289 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || | ||||| || | || || | || || || || |||||| | | Sbjct 51288 CACGAAGGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGA 51229 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACT---CTTAATCGTCCCCAAATTCTTTTG 111336 ||||| | |||||| ||||| | || ||| |||||| || || | | |||||| Sbjct 51228 ATACTCCATAATTTCAGTACAGAGATT---ACTGGACTTAATGGTACCAAGGTGCTTTTG 51172 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||| |||||||| || ||||| || || ||||| ||||| Sbjct 51171 GTTGGACTTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTG 51112 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CC 111453 | | || ||||| ||||| | || | |||| | | | || ||| | || Sbjct 51111 AGCCTCAAGGATAGCGAACCAAAGCTTCTG-GGCTTTGATAGTTT--TTCTCCCCTTACC 51055 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 || | |||||| | ||| || ||||| || || || |||||| || || Sbjct 51054 CTGCCTCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCC 50995 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | ||||| | ||| | ||| | ||| | || || ||||||||||| Sbjct 50994 AGGACACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAA 50935 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||| || || ||||| |||| | || ||||| | | || |||| || | ||| || Sbjct 50934 AAGATCGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 50875 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 50874 GTTCTTCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGC 50815 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 || | || ||||| ||| |||| | || || || || ||||||| | | Sbjct 50814 GAAGGCACC---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATA 50758 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 | || ||||| ||||| ||||| | || | ||| || || || ||| || Sbjct 50757 AGCTCGGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC 50698 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 || || | | || || ||||| | |||||||| ||||| ||| ||||| || || Sbjct 50697 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGC 50638 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | ||||| | |||||||| | || || || ||||| |||| | || || Sbjct 50637 ACAAGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAA 50578 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| |||||||| || | || ||||| |||||||| || Sbjct 50577 GCATGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 >seq21 Length=50189 Score = 114 bits (126), Expect = 2e-20 Identities = 287/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684 ||| ||||||||||| || | ||||| | | ||||| || | ||||||||| || | Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869 Query 181685 GTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGG 181744 ||||||||||||| || || ||| | ||||||||||| | ||| || ||| Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809 Query 181745 ATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAG 181803 | |||||| | | | ||| ||| ||| |||||||||||||| | | || || Sbjct 7808 GTGGAAGATCGCTCTCGTCATCCGTGG-AAGATTTGTGAAGATATAACGAGCAGAAGCAG 7750 Query 181804 CGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGT 181863 ||||||||||||| || || |||||||| ||||| || || | || || || | Sbjct 7749 CGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATAT 7690 Query 181864 TGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCG-CAAGGGACACTTCA 181922 |||| || | ||| | || || | ||||||| || ||| | ||||| Sbjct 7689 TGTTACTGCCGACAAAGTTTTGTGCTAAGCCGATGATGGTAGACGTCAAACTA-GCTTCA 7631 Query 181923 CCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCATTTC 181981 || || || || || | ||| |||| ||| || ||| ||| ||| || ||||| ||||| Sbjct 7630 CCATGATGATATGCAGTCTTCTCCGAAACGTA-ACCGACAAGCTGAGCGACCTTAATTTC 7572 Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACC 182041 | |||| || | ||| ||| || | | || || | ||| ||| |||||||| Sbjct 7571 CTTGGTGAGATTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 7512 Query 182042 ATCCGCCA 182049 || |||| Sbjct 7511 GTCGGCCA 7504 >seq110 Length=133707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 |||||| | ||| ||||| ||||| | ||||| |||||| || || | ||| | Sbjct 78943 CTTGCCGATCGCGTCAATTTCATCGACGAAGATAATACAGGGGGCGTTCTTCTTAGCGTT 78884 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | | || | || || || | || ||| ||||| |||||||| || || || | | Sbjct 78883 TGCGAACAAGTCACGCACTCGGGAGGGACCGACACCGACAAACATTTCGACGAACTCGGA 78824 Query 11740 GGCAGAGCACTGGATG-AATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 ||||| || | | | || || ||| | |||||| ||| | || ||||||||||| Sbjct 78823 ACCAGAG-ACAGAAAGGAAAGGCACACCGGCTTCACCGGCGGTAGCCTTGGCGAGGAGGG 78765 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 |||| || ||||| || ||| | |||| ||||||||| ||||| ||||||||| Sbjct 78764 TCTTACCGGTACCGGGAGGACCAGAAAGAATGGCGCCTCGAGGGATTTTGGCACCA 78709 >seq6 Length=242052 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| || || || || || || || |||||| ||||| Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | ||| || || ||||||||||| Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722 Query 122778 ACCCTCCAC 122786 ||| || || Sbjct 183721 ACCTTCGAC 183713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025884538400