Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq95 168 8e-37
seq6 120 4e-22
>seq95
Length=57217
Score = 168 bits (186), Expect = 8e-37
Identities = 715/1119 (64%), Gaps = 33/1119 (3%)
Strand=Plus/Minus
Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402
|||||| ||| |||| |||||||||| || || || || || | | |||||| |
Sbjct 51639 CCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGGT 51580
Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462
|||| |||| || | ||| | ||||| || || ||||| || || || || ||
Sbjct 51579 ACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGAA 51520
Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522
|| | ||| | || ||||||| || || |||| | || || ||
Sbjct 51519 GATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGAA 51460
Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582
| || ||||||||||||||||| ||||||| || ||||| | ||| || || || ||
Sbjct 51459 AGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGTTGCG 51400
Query 118583 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639
|| ||| ||| ||||| | || | || || | | || || |||| ||
Sbjct 51399 GGC---CTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGGCAAC 51343
Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699
|||||| || || ||||| ||||| | | | || | |||| || || || |
Sbjct 51342 AACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATCCACGAA 51283
Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759
|||||| || | || || || ||||| || | |||||| | || |||||
Sbjct 51282 GGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTC 51223
Query 118760 TATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817
|||||||| || || | || || ||| ||||||| || | || |||||| || |||
Sbjct 51222 CATAATTTCAGTACAGAGATTACTGGACT--TAATGGTACCAAGGTGCTTTTGGTTGGAC 51165
Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877
|| | ||| |||||||| ||| ||||| || || ||||| || || | ||
Sbjct 51164 TTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCA 51105
Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC--CTCTTCC 118934
|| ||||| ||| | | || | ||| | ||| || ||| || | || ||
Sbjct 51104 AGGATAGCGAACCAAAGCTTCTGG-GCTTTGATAGT----TTTTCTCCCCTTACCCTGCC 51050
Query 118935 TC--GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992
|| ||| | ||| || ||||| ||||| || | || | ||||| ||
Sbjct 51049 TCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGAC 50990
Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052
|| | | || || | || | ||| | ||| | || || ||||||||||| || |
Sbjct 50989 ACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGAT 50930
Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112
| ||||||||||| || |||| ||||| ||| || | || || | || || ||
Sbjct 50929 CGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCT 50870
Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172
| || || | || || | | ||| |||||||| || || || || | |||| |
Sbjct 50869 TCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGG 50810
Query 119173 ACCCCTTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226
|| | |||| ||| | |||| || || | |||||||||| | | | |
Sbjct 50809 CACC---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTC 50753
Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATT 119284
| ||||| ||||||||||| | || | || || || || || || ||| | ||
Sbjct 50752 GGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC--CTT 50695
Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344
|| | || || ||| ||||| | ||||||||| || || ||| ||||| || || ||
Sbjct 50694 CGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACA 50635
Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404
| ||||| | ||||||| ||||| || || ||| |||| | || | ||| |||||
Sbjct 50634 AGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCA 50575
Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443
||||| || |||| ||| ||||| || ||||| ||
Sbjct 50574 TGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536
>seq6
Length=242052
Score = 120 bits (132), Expect = 4e-22
Identities = 119/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || |||||||||||||||||| |||||||| || || |||||| |||||
Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
||||||||||| |||||||| | |||||| || | || || ||||||||||||||
Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCA 130168
|| || || ||||| || | ||| ||||||
Sbjct 183721 ACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCA 183688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618429177987240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |