Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq95 168 8e-37 seq6 120 4e-22 >seq95 Length=57217 Score = 168 bits (186), Expect = 8e-37 Identities = 715/1119 (64%), Gaps = 33/1119 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| ||| |||| |||||||||| || || || || || | | |||||| | Sbjct 51639 CCACATGTCATACTGAAGGATACCTTTAGAAAGGGGAGAGCCTTCGTAAGACTCATAGGT 51580 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 |||| |||| || | ||| | ||||| || || ||||| || || || || || Sbjct 51579 ACCCTGTTCCTCAGCAAGCTCGCATGAAGCCTCAAGCGCCGCGTGGTAAATGGTCTCGAA 51520 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || | ||| | || ||||||| || || |||| | || || || Sbjct 51519 GATCTGGATATTGAGCTCCCTGGCCTCAAGAGAGTCGAACGGCATGCGAAGGGCCATGAA 51460 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 | || ||||||||||||||||| ||||||| || ||||| | ||| || || || || Sbjct 51459 AGCGTCAGCGAGACCTTGGACACCAAGGCCAACAGGTCGATGGCGCATGTTGGAGTTGCG 51400 Query 118583 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || ||| ||| ||||| | || | || || | | || || |||| || Sbjct 51399 GGC---CTCAGGCACTGGATAGTAGTTACGGGTAATGACAGTGTCGAGGTTCTTGGCAAC 51343 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699 |||||| || || ||||| ||||| | | | || | |||| || || || | Sbjct 51342 AACCTTGGTAATCTCATGCAGCTTCTTGAAGTCGTAGACGCGACGTTCAAGATCCACGAA 51283 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 |||||| || | || || || ||||| || | |||||| | || ||||| Sbjct 51282 GGCAGGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTC 51223 Query 118760 TATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 |||||||| || || | || || ||| ||||||| || | || |||||| || ||| Sbjct 51222 CATAATTTCAGTACAGAGATTACTGGACT--TAATGGTACCAAGGTGCTTTTGGTTGGAC 51165 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || | ||| |||||||| ||| ||||| || || ||||| || || | || Sbjct 51164 TTGGAGTTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCA 51105 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC--CTCTTCC 118934 || ||||| ||| | | || | ||| | ||| || ||| || | || || Sbjct 51104 AGGATAGCGAACCAAAGCTTCTGG-GCTTTGATAGT----TTTTCTCCCCTTACCCTGCC 51050 Query 118935 TC--GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 || ||| | ||| || ||||| ||||| || | || | ||||| || Sbjct 51049 TCTCGTAGCTCTCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGAC 50990 Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || | | || || | || | ||| | ||| | || || ||||||||||| || | Sbjct 50989 ACTCAGCGGGACACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGAT 50930 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | ||||||||||| || |||| ||||| ||| || | || || | || || || Sbjct 50929 CGGGGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCT 50870 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 | || || | || || | | ||| |||||||| || || || || | |||| | Sbjct 50869 TCCTTAAGTCAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGG 50810 Query 119173 ACCCCTTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 || | |||| ||| | |||| || || | |||||||||| | | | | Sbjct 50809 CACC---AGGACGCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTC 50753 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATT 119284 | ||||| ||||||||||| | || | || || || || || || ||| | || Sbjct 50752 GGAGCATAGGAATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCC--CTT 50695 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | || || ||| ||||| | ||||||||| || || ||| ||||| || || || Sbjct 50694 CGCACGGATATTGTGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACA 50635 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | ||||| | ||||||| ||||| || || ||| |||| | || | ||| ||||| Sbjct 50634 AGTCTTGAGAGTATCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCA 50575 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 ||||| || |||| ||| ||||| || ||||| || Sbjct 50574 TGATGACATCTGGGGCCGGGGAGTACCGGCATTGAAAAG 50536 >seq6 Length=242052 Score = 120 bits (132), Expect = 4e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||||||||||||||| |||||||| || || |||||| ||||| Sbjct 183841 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 183782 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | || || |||||||||||||| Sbjct 183781 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAAGAT 183722 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCA 130168 || || || ||||| || | ||| |||||| Sbjct 183721 ACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCA 183688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429177987240