Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq95 156 5e-33 seq6 154 2e-32 seq21 86.0 7e-12 >seq95 Length=57217 Score = 156 bits (172), Expect = 5e-33 Identities = 713/1120 (64%), Gaps = 33/1120 (3%) Strand=Plus/Plus Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 || |||||||| ||||| || | ||||| ||||| ||||| || | |||| ||| Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || || || || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||| |||||||| | ||||| || || | | || || || ||| || Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 50715 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || ||| | || | ||||| ||||| ||||| || | | | ||||||| || || Sbjct 50716 ACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCGA 50775 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || | |||| ||| ||||| || | |||| ||||||||||||| Sbjct 50776 TACGTTGACCAAGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCC 50832 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 50833 TGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 50892 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || ||||| |||| ||| |||||||| || ||||| ||||||||| | || || Sbjct 50893 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAA 50952 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| | ||| | || | ||||| | || ||||| || |||| | Sbjct 50953 TCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATAC 51012 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 || || || ||||| |||||| | |||||| | ||| || || || Sbjct 51013 GGAGAAGAATTTGAGAAGCTTTACGAGAGCTACGAGAGGCAGGGTAAGGGGAGAAAAACT 51072 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | ||| | || | | ||| ||||| || || |||| || ||||||||| || Sbjct 51073 ATCAAAGC-CCAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGGTGTCCC 51131 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 ||||| ||| || || ||| ||| ||| || |||||| | | ||| || Sbjct 51132 TTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCAT 51191 Query 104989 CAAG---AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| ||| ||||||||||| ||||| |||| | | | |||||| || Sbjct 51192 TAAGTCCAGT---AATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAGGTTGC 51248 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 105105 || ||||||||||| || | ||||| || | ||||||| || || | | | Sbjct 51249 CGTCTGTAACCTCGCTTCTCTTGCTCTTCCTGCCTTCGTGGATCTTGA-ACGTCG-CGTC 51306 Query 105106 T--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | || | | || || || || |||| || ||| |||| ||||| ||| || Sbjct 51307 TACGACTTCAAGAAGCTGCATGAGATTACCAAGGTTGTTGCCAAGAACCTCGACACTGTC 51366 Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 ||| | || | || || || |||| || || || || || ||| | || || Sbjct 51367 ATTACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 51423 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 || |||| || ||||| || |||||||| || | ||||| |||| | || Sbjct 51424 CCTGTTGGCCTTGGTGTCCAAGGTCTCGCTGACGCTTTCATGGCCCTTCGCATGCCGTTC 51483 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || || || | ||| ||||| | || || |||||||| || ||||| || Sbjct 51484 GACTCTCTTGAGGCCAGGGAGCTCAATATCCAGATCTTCGAGACCATTTACCACGCGGCG 51543 Query 105341 CTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397 |||||||| |||| ||| | || |||| | ||| | ||||| | | || || Sbjct 51544 CTTGAGGC---TTCATGCGAGCTTGCTGAGGAACAGGGTACCTATGAGTCTTACGAAGGC 51600 Query 105398 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 ||||| ||| |||| | ||||| | ||| ||||||| Sbjct 51601 TCTCCCCTTTCTAAAGGTATCCTTCAGTATGACATGTGGG 51640 >seq6 Length=242052 Score = 154 bits (170), Expect = 2e-32 Identities = 126/153 (82%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 |||||||||| |||| || || || || |||||||||||||||||||| ||| | | Sbjct 183688 TGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTC 183747 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | |||||||||||||||||||||||||| |||||| |||||| |||||||| || Sbjct 183748 CATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCAT 183807 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||||||| |||||| || ||||| Sbjct 183808 CTCTCGTGACGAGGGTCTCCACACCGACTTTGC 183840 >seq21 Length=50189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336 ||| ||||||||||| |||| ||| || | | ||||| || | ||||||||| | | Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869 Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396 |||||| |||||| ||| || || | || |||||||| | | || ||| || Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809 Query 168397 ATCAAAGATCTTTC-GGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | |||||| || | |||| || || ||||| |||||||| | | || | Sbjct 7808 GTGGAAGATCGCTCTCGTCATC-CGTGGAAGATTTGTGAAGATATAACGAGCAGAAGCAG 7750 Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515 | || |||||||| || || |||||||||||||| || || | |||||||||| Sbjct 7749 CGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATAT 7690 Query 168516 TGTT 168519 |||| Sbjct 7689 TGTT 7686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255120497960