Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq95 156 5e-33
seq6 154 2e-32
seq21 86.0 7e-12
>seq95
Length=57217
Score = 156 bits (172), Expect = 5e-33
Identities = 713/1120 (64%), Gaps = 33/1120 (3%)
Strand=Plus/Plus
Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395
|| |||||||| ||||| || | ||||| ||||| ||||| || | |||| |||
Sbjct 50536 CTTTTCAATGCCGGTACTCCCCGGCCCCAGATGTCATCATGCTTTCTCGTAGCCATGAAG 50595
Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455
|| || || || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 50596 GATGATTCCATTGATGGTATCTACGATACTCTCAAGACTTGTGCTCAGATCTCCAAGACC 50655
Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515
||||| |||||||| | ||||| || || | | || || || ||| ||
Sbjct 50656 GCTGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 50715
Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575
|| || ||| | || | ||||| ||||| ||||| || | | | ||||||| || ||
Sbjct 50716 ACCAACGGTTACTCTAACGGTATCATTCCTATGCTCCGAGCTTATGACGCCACTGCTCGA 50775
Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629
|| || | |||| ||| ||||| || | |||| |||||||||||||
Sbjct 50776 TACGTTGACCAAGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCC 50832
Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689
|||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 50833 TGGCACGCTGATGTATTTGATTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 50892
Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749
|| || ||||| |||| ||| |||||||| || ||||| ||||||||| | || ||
Sbjct 50893 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTCGAA 50952
Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
||| | ||| | || | ||||| | || ||||| || |||| |
Sbjct 50953 TCCGATGGGGACTGGACCCTTATGTGTCCCGCTGAGTGTCCTGGGCTTGCCGACGTATAC 51012
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869
|| || || ||||| |||||| | |||||| | ||| || || ||
Sbjct 51013 GGAGAAGAATTTGAGAAGCTTTACGAGAGCTACGAGAGGCAGGGTAAGGGGAGAAAAACT 51072
Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| ||| | || | | ||| ||||| || || |||| || ||||||||| ||
Sbjct 51073 ATCAAAGC-CCAGAAGCTTTGGTTCGCTATCCTTGAGGCTCAGACAGAGACTGGTGTCCC 51131
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
||||| ||| || || ||| ||| ||| || |||||| | | ||| ||
Sbjct 51132 TTACATCTGTTATAAGGATGCCGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCAT 51191
Query 104989 CAAG---AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045
||| ||| ||||||||||| ||||| |||| | | | |||||| ||
Sbjct 51192 TAAGTCCAGT---AATCTCTGTACTGAAATTATGGAGTATTCTTCTCCCGATGAGGTTGC 51248
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 105105
|| ||||||||||| || | ||||| || | ||||||| || || | | |
Sbjct 51249 CGTCTGTAACCTCGCTTCTCTTGCTCTTCCTGCCTTCGTGGATCTTGA-ACGTCG-CGTC 51306
Query 105106 T--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163
| || | | || || || || |||| || ||| |||| ||||| ||| ||
Sbjct 51307 TACGACTTCAAGAAGCTGCATGAGATTACCAAGGTTGTTGCCAAGAACCTCGACACTGTC 51366
Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220
||| | || | || || || |||| || || || || || ||| | || ||
Sbjct 51367 ATTACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 51423
Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280
|| |||| || ||||| || |||||||| || | ||||| |||| | ||
Sbjct 51424 CCTGTTGGCCTTGGTGTCCAAGGTCTCGCTGACGCTTTCATGGCCCTTCGCATGCCGTTC 51483
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
|| || || || | ||| ||||| | || || |||||||| || ||||| ||
Sbjct 51484 GACTCTCTTGAGGCCAGGGAGCTCAATATCCAGATCTTCGAGACCATTTACCACGCGGCG 51543
Query 105341 CTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397
|||||||| |||| ||| | || |||| | ||| | ||||| | | || ||
Sbjct 51544 CTTGAGGC---TTCATGCGAGCTTGCTGAGGAACAGGGTACCTATGAGTCTTACGAAGGC 51600
Query 105398 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437
||||| ||| |||| | ||||| | ||| |||||||
Sbjct 51601 TCTCCCCTTTCTAAAGGTATCCTTCAGTATGACATGTGGG 51640
>seq6
Length=242052
Score = 154 bits (170), Expect = 2e-32
Identities = 126/153 (82%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862
|||||||||| |||| || || || || |||||||||||||||||||| ||| | |
Sbjct 183688 TGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTCGCCTC 183747
Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922
|| | |||||||||||||||||||||||||| |||||| |||||| |||||||| ||
Sbjct 183748 CATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCAT 183807
Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||||||| |||||| || |||||
Sbjct 183808 CTCTCGTGACGAGGGTCTCCACACCGACTTTGC 183840
>seq21
Length=50189
Score = 86.0 bits (94), Expect = 7e-12
Identities = 167/244 (68%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336
||| ||||||||||| |||| ||| || | | ||||| || | ||||||||| | |
Sbjct 7928 ACCAGTACCGATACCATCTGCACCATTGATCAACACCATCGGAACGGTTGGCATGAAATA 7869
Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396
|||||| |||||| ||| || || | || |||||||| | | || ||| ||
Sbjct 7868 GTCTGGTTCAATGCTCATACCGTCCTCGACTAAGTAGTTGAGCAATCCGTCGTCTGCAGG 7809
Query 168397 ATCAAAGATCTTTC-GGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455
| |||||| || | |||| || || ||||| |||||||| | | || |
Sbjct 7808 GTGGAAGATCGCTCTCGTCATC-CGTGGAAGATTTGTGAAGATATAACGAGCAGAAGCAG 7750
Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515
| || |||||||| || || |||||||||||||| || || | ||||||||||
Sbjct 7749 CGTCTTTACCACCTGCAAGTCGAGTACCAAACTGACCGTTGGGATCTAACAGATTGATAT 7690
Query 168516 TGTT 168519
||||
Sbjct 7689 TGTT 7686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583255120497960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |